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Open Access Highly Accessed Research article

Genome-wide survey of allele-specific splicing in humans

Victoria Nembaware1, Bukiwe Lupindo1, Katherine Schouest2, Charles Spillane2, Konrad Scheffler1 and Cathal Seoighe1*

Author Affiliations

1 Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Private Bag, Rondebosch, 7700, Cape Town, South Africa

2 Genetics & Biotechnology Lab, Department of Biochemistry & BioSciences Institute, University College Cork, Cork, Ireland

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BMC Genomics 2008, 9:265  doi:10.1186/1471-2164-9-265

Published: 2 June 2008

Additional files

Additional file 1:

Results of genome-wide scan of polymorphisms in splicing-regulatory regions. Exon-array diagrams. Diagrams illustrating evidence of allele-specific splicing from exon-array data for 1,185 srSNPs are available from http://mancala.cbio.uct.ac.za/splicing/ExonArray webcite.

Format: DOC Size: 59KB Download file

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Additional file 2:

Allele-specific splicing candidates inferred from EST data. Exon-array diagrams. Diagrams illustrating evidence of allele-specific splicing from exon-array data for 1,185 srSNPs are available from http://mancala.cbio.uct.ac.za/splicing/ExonArray webcite.

Format: XLS Size: 3.5MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Allele-specific splicing candidates inferred from exon array data. Exon-array diagrams. Diagrams illustrating evidence of allele-specific splicing from exon-array data for 1,185 srSNPs are available from http://mancala.cbio.uct.ac.za/splicing/ExonArray webcite.

Format: XLS Size: 806KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Length differences and frame preservation of allele-specific isoform pairs. Exon-array diagrams. Diagrams illustrating evidence of allele-specific splicing from exon-array data for 1,185 srSNPs are available from http://mancala.cbio.uct.ac.za/splicing/ExonArray webcite.

Format: XLS Size: 242KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data