Table 2 |
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|
Description of all microarray datasets analyzed in this study. |
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|
Category |
Tissue |
# Samples |
Platform |
GEO reference |
Sample Description |
|
|
|||||
|
Epithelial |
Mouth |
5 |
U133A |
GSE8987 |
5 never smokers |
|
Epithelial |
Bronch |
23 |
U133A |
GSE994 |
23 never smokers |
|
Epithelial |
Nose |
8 |
U133A+2.0 |
GSE8987 |
8 never smokers |
|
Epithelial |
Nose |
11 |
U133A |
GSE2395 |
11 normal nasal epithelial samples; from cystic fibrosis study |
|
Epithelial |
Lung |
14 |
U133A |
GSE1650 |
no/mild emphysema patients; from COPD study |
|
Epithelial |
Skin |
5 |
U133A |
GSE5667 |
normal skin tissue |
|
Epithelial |
Esophagus |
8 |
U133A |
GSE1420 |
normal esophageal epithelium |
|
Mostly epithelial |
Kidney |
8 |
U133+2.0 |
GSE3526 |
4 kidney cortex, 4 kidney medulla (post-mortem) |
|
non epithelial |
Bone marrow |
5 |
U133+2.0 |
GSE3526 |
5 bone marrow (post-mortem) |
|
non epithelial |
Heart |
5 |
U133A |
GSE2240 |
left ventricular myocardium, non-failing |
|
non epithelial |
Brain |
11 |
U133A |
GSE5389 |
postmortem orbitofrontal cortex |
|
|
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|
Microarray datasets from 9 studies obtained from GEO, as well as the 2 datasets from this study are listed. Tissue type, total sample numbers, microarray platform, GEO accession number, and a brief description of each dataset are included. |
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|
Sridhar et al. BMC Genomics 2008 9:259 doi:10.1186/1471-2164-9-259 |
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