Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

doi:10.1186/1471-2164-9-252

BMC Genomics

Volume 9

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Bischoff SR
Tsai S
Hardison NE
York AM
Freking BA
Nonneman D
Rohrer G
Piedrahita JA

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Tsai S
Hardison NE
York AM
Freking BA
Nonneman D
Rohrer G
Piedrahita JA
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Methodology article

Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

Steve R Bischoff¹^,3^* , Shengdar Tsai¹^,3^* , Nicholas E Hardison¹^,4 , Abby M York¹ , Brad A Freking² , Dan Nonneman² , Gary Rohrer² and Jorge A Piedrahita¹^,3

¹Department of Molecular Biomedical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, NC, 27606, USA

²USDA, ARS, U.S. Meat Animal Research Center, Clay Center, NE 68933-0166, USA

³Center for Comparative Medicine and Translational Research, North Carolina State University, Raleigh, NC, USA

⁴Program in Statistical Genetics, Department of Statistics, North Carolina State University, Raleigh, NC 27695-7566, USA

author email corresponding author email* Contributed equally

BMC Genomics 2008, 9:252doi:10.1186/1471-2164-9-252


Published:	29 May 2008

Additional files

Additional File 1:

Click-'N-SNP. Instructions and procedure to execute SAS code for SFP discovery.

Format: ZIP Size: 22KB Download file

Additional File 2:

Porcine_Candidate_SFPs_NoFC. Intensity plots of SFPs with q < 0.5, no fold change threshold.

Format: ZIP Size: 6MB Download file

Additional File 3:

Porcine_Candidate_SFPs_2FC. Intensity plots of SFPs with q < 0.5 with |fold change| > 2.