|
Overall characteristics of the genomes of B. longum strains DJO10A and NCC2705. |
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| DJO10A |
NCC2705 |
|
|
|
||
| Size of chromosome (bp) |
2,375,792 |
2,256,640 |
| Overall G+C % |
60.15 |
60.12 |
| Number of plasmids |
2 (10 and 3.6 kb) |
1 (3.6 kb) |
| Genes |
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| Total genes |
1990 |
1727 |
| Average gene length (bp) |
1031 |
1115 |
| Gene density (genes/kb) |
0.838 |
0.765 |
| Gene coding percentage (%) |
86.4 |
85.3 |
| Gene G+C % |
61.13 |
60.86 |
| Unique Sequences |
||
| Strain-specific unique genes |
269 |
117 |
| Number of unique regionsa |
17 |
6 |
| Number of genes in unique regions |
218 |
84 |
| Prophage |
1 |
1 |
| Number of genes in prophage region |
57 |
19 |
| RNAs and Repeat Sequences |
||
| rRNA operons |
4 |
4 |
| tRNAs |
58 |
57 |
| Tandem repeats |
22 |
23 |
| Mobile Elementsb |
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| Mobile integrase cassette (MIC) |
4 |
3 |
| IS3 family |
13 |
14 |
| IS21 family |
10 |
7 |
| IS30 family |
9 |
5 |
| IS256 family |
4 |
7 |
| ISL3 family |
7 |
12 |
| IS200/605 family |
1 |
1 |
|
a, refers to unique regions that encode functional or hypothetical genes in DNA regions > 3 kb, b, includes fragmented elements | ||
Lee et al. BMC Genomics 2008 9:247 doi:10.1186/1471-2164-9-247 |
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