|
Incorporating rate variation in the maximum likelihood estimation using the same set of data in Hao and Golding (2006). |
||||||
| Rate |
Gamma Distribution |
Constant Rate |
ΔLnL |
|||
|
|
|
|||||
| α value |
MLE |
LnL |
MLE |
LnL |
||
|
|
||||||
| μ1 = μ2 = μ3 |
0.37 |
5.29 |
-39765 |
0.51 |
-40277 |
512 |
|
|
||||||
| μ1 |
5.83 |
4.73 |
-36874 |
4.42 |
-36902 |
28 |
| μ2 = μ3 |
0.37 |
0.35 |
||||
|
|
||||||
| μ1 |
3.04 |
4.49 |
-36042 |
3.92 |
-36128 |
86 |
| μ2 |
0.32 |
0.28 |
||||
| μ3 |
1.67 |
1.23 |
||||
Hao and Golding BMC Genomics 2008 9:235 doi:10.1186/1471-2164-9-235 |
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