BMC Genomics

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Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

Nalini Polavarapu, Leonardo Mariño-Ramírez, David Landsman, John F McDonald and I King Jordan*

BMC Genomics 2008, 9:226 doi:10.1186/1471-2164-9-226

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Heat shock factor binding in Alu repeats expands its involvement in stress through an antisense mechanism

Rajesh Pandey, Amit K Mandal, Vineet Jha, Mitali Mukerji Genome Biology 2011, 12:R117 (23 November 2011)

HSF binding to conserved sites in Alu repeats initiates an antisense transcript-mediated response to heat shock

Research article   Open Access

Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome

Martin Smith, Frédéric Bringaud, Barbara Papadopoulou BMC Genomics 2009, 10:240 (22 May 2009)

Research article   Open Access

Genomic complexity of the variable region-containing chitin-binding proteins in amphioxus

Larry J Dishaw, M Gail Mueller, Natasha Gwatney, John P Cannon, Robert N Haire, Ronda T Litman, Chris T Amemiya, Tatsuya Ota, Lee Rowen, Gustavo Glusman, Gary W Litman BMC Genetics 2008, 9:78 (1 December 2008)

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'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus

Jacob G Bundy, Jasmin K Sidhu, Faisal Rana, David J Spurgeon, Claus Svendsen, Jodie F Wren, Stephen R Stürzenbaum, A John Morgan, Peter Kille BMC Biology 2008, 6:25 (3 June 2008)

The toxic effects of chemical contaminants like copper on a key indicator organism, the earthworm, can be monitored by combining metabolomics and transcriptomics, a systems ecotoxicology approach that provides detailed molecular information about adaptation to soil pollutants.