Table 2

Comparison of putative dif sites in H. akashiwo chloroplast genomes with those of selected bacteria and viruses

XerC

Binding

Xer D


#H. akashiwo 1

ACTGAGCTAAT

AGCCCAACA

TTATGTTAAAT

&H. akashiwo 2

ATAGGCCTTCG

TCCCCT

TTATGTTAAAT

&H. akashiwo 3

ATTGAGGATCA

TTTTTG

TTATGTTAAAG

%H. akashiwo 4

AAAAACCAAAA

AATAAT

TTATGTTAAAG

*E. coli

GGTGCGCATAA

TGTATA

TTATGTTAAAT

*S. typhimurium

GGTGCGCATAA

TGTATA

TTATGTTAAAT

*S. typhi

GGAGCGCATAA

TGTATA

TTATGTTAAAT

*V. cholerae chr 1

AGTGCGCATTA

TGTATG

TTATGTTAAAT

*V. cholerae chr 11

AATGCGCATTA

CGTGCG

TTATGTTAAAT

*H. influenzae

ATTTCGCATAA

TATAAA

TTATGTTAAAT

*B. subtilis

ACTTCCTAGAA

TATATA

TTATGTAAACT

*ColE1 cer

GGTGCGTACAA

TTAAGGGA

TTATGGTAAAT

*pSC101 psi

GGTGCGCGCAA

GATCC

TTATGTTAAAC


# Present in CCMP452 and NIES293, on inverted repeat

& Present in CCMP452 and NIES293, on large single copy

% Present in NIES293, on inverted repeat

* From Lesterlin et al, 2004 [77]

Cattolico et al. BMC Genomics 2008 9:211   doi:10.1186/1471-2164-9-211

Open Data