Table 1

Sequence production for the SNP discovery step. Sequence production for the SNP discovery step for each of white spruce and black spruce.

Production parameter

White spruce

Black spruce

In common between the two species


Number of genes successfully amplified and resequenced

487

462

457

Number of genes with orthologous SNPs

394

355

279

Total number of orthologous SNPs

1102

959

45

Number of genes on species-specific SNP array

425

348

273

Number of resequenced SNPs on species-specific SNP array

730

768

14

Number of in silico SNPs1 on species-specific SNP array

38

-

-


1 in silico SNPs were detected in aligned ESTs derived from white spruce cDNA libraries. The resource is described in Pavy et al. [48]. For black spruce, all assayed SNPs were obtained after resequencing from genomic DNA.

Pavy et al. BMC Genomics 2008 9:21   doi:10.1186/1471-2164-9-21

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