Table 1

Clustering of 46 TF in PlantTribes (PT) and Genome Clustering database (GCD) compared to DAFT and DRTF databases.


Arabidopsis thaliana
 Oryza sativa


FT NAME
 IPR
 DAFT
 PT
 GCD
 DRTF
 PT
 GCD










BC
 PF

BC
 PF
EIL
 IPR006957
 6
 6
 6
 6
 9
 10
 10
 12
BBR/BPC
 IPR010409
 7
 8
 10
 12
 4
 4
 5
 5
S1Fa-like
 IPR006779
 3
 3b(3)
 3
 3
 2
 2
 5
 5
BES1
 IPR008540
 8
 6
 9
 10
 6
 5
 4
 5
GIF
 IPR007726
 3
 3
 2
 3
 3
 3
 2
 3
TCP
 IPR005333
 23
 23b(2)
 27b(15)
 27
 21
 21b(2)
 25b(14)
 26
PLATZ
 IPR006734
 10
 9
 9
 10
 16
 16
 17
 19
GeBP
 IPR007592
 21
 18
 21b(8)
 21
 15
 21b(4)
 15b(10)
 16
SRS
 IPR007818
 10
 10
 11
 12
 5
 5
 5
 5
Whirly (PBF-2-like)
 IPR013742
 2
 3
 3
 1
 1
 2
 3
 0
AUX/IAA family
 IPR003311
 29
 28
 33
 34
 31
 33
 41
 41
CCAAT-HAP3
 IPR003957
 11
 12
 17
 37a
 12
 12
 12
 29a
CCAAT-HAP2
 IPR001289
 10
 10
 18
 19
 11
 9
 17
 19a
C2C2-DOF
 IPR003851
 36
 36
 40b(16)
 40
 30
 29
 34b(18)
 33
C2C2-YABBY
 IPR006780
 5
 5
 6
 6
 8
 7
 6
 8
TAZ
 IPR000197
 9
 11
 5
 5
 6
 8
 3
 4
TUB/TLP
 IPR000007
 11
 11
 11
 10
 14
 15
 16
 14
SBP
 IPR004333
 16
 17
 26b(10)
 24
 20
 18
 20b(13)
 21
HSF
 IPR000232
 23
 23
 22
 25
 29
 29
 37
 39
AP2/EREBP
 IPR001471
 146
 110
 113
 150
 165
 108
 108
 170
NAC
 IPR003441
 107
 90
 92
 119
 131
 92
 85
 152
bZIP
 IPR004827
 72
 185b(12)
 82b(22)
 84
 84
 205b(19)
 64b(22)
 90
MADS
 IPR002100
 104
 71
 69
 65
 64
 65
 62
 44
WRKY
 IPR003657
 72
 71
 105b(30)
 81
 98
 99
 96b(37)
 104
GRAS
 IPR005202
 33
 32
 25
 34
 55
 63
 39
 57
AS2/LOB
 IPR004883
 42
 36
 35
 45
 36
 29
 21
 37
MBF1
 IPR001387
 3
 3
 3
 3
 2
 2
 2
 2
Nin-like
 IPR003035
 14
 61a
 9
 10
 13
 315a
 13b(9)
 13b(2)
ZF-HD
 IPR006456
 16
 16
 13
 17
 15
 15
 8
 15
CPP
 IPR005172
 8
 10
 3
 9
 11
 18
 3
 11
ARF
 IPR011525
 22
 25
 24
 19
 26
 29
 26
 22
ZIM
 IPR010399
 18
 10
 26b(9)
 20
 18
 13
 10
 19
VOZ
 IPR009105
 2
 2
 2
 1
 2
 2
 2
 0
ULT
 IPR000770
 2
 2
 2
 1
 2
 2
 2
 0
GARP-G2-like
 IPR001005 IPR009057
 43
 73
 22
 260a
 46
 80
 56b(23)
 244a
GARP-ARR-B
 IPR001789 IPR009057
 10
 73a
 8
 14
 8
 80a
 4
 9
LUG
 IPR006594 IPR011046
 2
 76a
 5
 227a
 6
 74a
 3
 207
CAMTA
 IPR000048 IPR002110 IPR005559
 6
 6
 4
 3
 6
 8
 5
 5
ALFIN
 IPR001965 IPR011011
 7
 7
 7
 46a
 10
 10
 10
 56
CCAAT-DR1
 IPR003958 IPR009072
 2
 12a
 17a
 37a
 1
 12a
 12a
 29a
CCAAT-HAP5
 IPR003958 IPR009072
 13
 10
 15
 37a
 16
 12
 17b(8)
 29a
NZZ
1
 1
 1
 1
 1
 1
 0
 0
GRF
9
 9
 9b(7)
 9b(8)
 12
 16
 12b(8)
 12b(11)
HRT-like
2
 3
 3b(2)
 2b(2)
 1
 1
 1
 1
MYB3R and R2R3
 IPR001005 IPR009057
 150
 222
 118
 260
 129
 221
 86
 244

a: Cluster containing more than 50% of sequences in comparison with the total sequence family members present in DATF/DRTF; b: Total number of sequences identified in several subgroups (number of subgroups in brackets) for the DATF/DRTF corresponding gene list; PF by PFAM domains; BC by BLASTCLUST. Note that for all groups, the sequence number differences found with DATF/DRTF are mainly due to data source versions used.

Conte et al. BMC Genomics 2008 9:183   doi:10.1186/1471-2164-9-183