Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches

doi:10.1186/1471-2164-9-181

BMC Genomics
Volume 9

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A correction for this article has been published in BMC Genomics 2008, 9:602

Research article

Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches

Wasna Viratyosin¹ , Supawadee Ingsriswang¹ , Eakasit Pacharawongsakda¹ and Prasit Palittapongarnpim¹^,2

¹BIOTEC Central Research Unit, National Center for Genetic Engineering and Biotechnology, Pathumthani, 12120, Thailand

²Department of Microbiology, Faculty of Science, Mahidol University, Bangkok, 10400, Thailand

author email corresponding author email

BMC Genomics 2008, 9:181doi:10.1186/1471-2164-9-181


Published:	21 April 2008

Additional files

Additional file 1:

Putative PP proteins in L. interrogans serovar Lai genome. This table lists the Lai locus and protein annotation of (A) 17 predicted PP derived from the consensus vote prediction (B) 20 predicted PP derived from 2 out of 3 predictions with significant DBsubloc and/or GTD predictions, (C) 38 predicted PP derived from 1 out of 3 predictions with significant DBsubloc and/or GTD predictions.

Format: XLS Size: 47KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

Putative CP proteins predicted by the consensus vote prediction in L. interrogans serovar Lai genome. This table lists the Lai locus and protein annotation of 418 predicted CP proteins derived from consensus vote and used as the training set for the development of the LDA based classifier.

Format: XLS Size: 76KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

Putative CM proteins predicted by the consensus vote prediction in L. interrogans serovar Lai genome. This table lists the Lai locus and protein annotation of 332 predicted CM proteins derived from consensus vote and used as the training set for the development of the LDA based classifier.

Format: XLS Size: 60KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 4:

Putative CP proteins predicted by LDA based classifier of L. interrogans serovar Lai genome. This table lists the Lai locus and protein annotation of 2272 predicted CP proteins predicted by LDA based classifier

Format: XLS Size: 223KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 5:

Putative CM proteins predicted by LDA based classifier of L. interrogans serovar Lai genome. This table lists the Lai locus and protein annotation of 481 predicted CM proteins predicted by LDA based classifier.

Format: XLS Size: 67KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 6:

Subcellular localizations of 28 experimentally studied OM and EX proteins of L. interrogans serovar Lai. This table lists the protein name, L. interrogans serovar Lai and copenhengeni locus, experimental localization, subcellular localization prediction using PSORTb, ProtCompB, PA, and the combination prediction of 28 experimentally studied OM and EX proteins.

Format: XLS Size: 44KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 7:

The result of subcellular localization of putative lipoproteins using the combination method. This table lists the Lai locus tag and protein annotation of 125 probable lipoproteins and 21 possible lipoproteins predicted by SpLip programs [19] and the subcellular localization of these lipoproteins predicted by the combination method.

Format: XLS Size: 48KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 8:

Subcellular localization of vaccine candidate using the combination method.. This table lists the Lai locus tag and protein annotation of 226 vaccine candidate predicted by Yang et al. [20] and the subcellular localization of these vaccine candidates predicted by the combination method.

Format: XLS Size: 59KB Download file

This file can be viewed with: Microsoft Excel Viewer