Table 3 |
||||
|
Operators for various LacI-family TFs present in L. plantarum. The operators that were verified by experiment in several species of the phylum Firmicutes are listed in normal print, the operators predicted by us for the orthologous TFs in L. plantarum are in bold italics. O1 and O2 indicate the relative position of the operator sequences with respect to the translation start. * Transcription from O1 was 10 times stronger than from O2. |
||||
|
CcpA-like LacI-family TF |
Organism |
Site |
Operator |
Evidence(a) |
|
|
||||
|
MalR |
S. pneumoniae |
O1 |
CG CAAA CG TTTT CC |
pred/exp: [53] |
|
Om |
CG CAAA CG TTTG CG |
pred/exp: [53] |
||
|
Lp_0172 |
L. plantarum |
cG CAAa CG cTTG CA |
pred, this work |
|
|
RbsR |
L. sakei |
gT AAAA CG TTTT Ac |
pred: [112] |
|
|
E. faecalis |
gT AAAA CG TTTT Ac |
|||
|
Lp_3661 |
L. plantarum |
.T AAAA CG TTTT Aa |
pred, this work |
|
|
|
||||
|
EbgR-like LacI-family TF |
||||
|
|
||||
|
LacR |
L. delbrueckii |
O1 |
TTG TTT ACT AAA AAT |
pred/exp: [50] |
|
O2 |
TTG TTT AGT AAA CGG |
pred/exp: [50] |
||
|
Lp_3470 |
L. plantarum |
aaa TTT AGT AAT t.. |
pred, this work |
|
|
GalR |
S. thermophilus |
..T TTT AGT AAA A.. |
pred/exp: [51] |
|
|
GalR |
S. mutans |
O1* |
AAA TTT AGT AAA ATT |
pred/exp: [52] |
|
O2* |
ATT TTT ACT AAA ATT |
pred/exp: [52] |
||
|
Lp_3479 |
L. plantarum |
aat TTT AGT AAA a.. |
pred, this work |
|
|
|
||||
|
Francke et al. BMC Genomics 2008 9:145 doi:10.1186/1471-2164-9-145 |
||||
