Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: Focus on point miscalls and artefactual expansions

Mark J Mandel¹ , Eric V Stabb² and Edward G Ruby¹

¹Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, 1550 Linden Drive, Madison WI 53706-1521, USA

²Department of Microbiology, University of Georgia, 828 Biological Sciences, Athens, GA 30602-2605, USA

author email corresponding author email

BMC Genomics 2008, 9:138doi:10.1186/1471-2164-9-138


Published:	25 March 2008

Additional files

Additional file 1:

Table listing oligonucleotide primers. The PCR and sequencing primers used to analyze resequencing targets.

Format: XLS Size: 42KB Download file

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Additional file 5:

Figure of umuDC degeneration in ES114. Alignment of umuDC in strains ES114 and MJ11.

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Additional file 4:

Table of novel gene features. Detailed ES114 gene annotations added in version 2.0.

Format: XLS Size: 40KB Download file

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Additional file 2:

Table of version 2.0 sequence changes. Detailed base-by-base descriptions of sequence changes from ES114 release version 1.0 to 2.0.

Format: XLS Size: 89KB Download file

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Additional file 3:

Table of fragment GenBank accession numbers. The GenBank accession numbers for the resequenced fragments in ES114.

Format: XLS Size: 23KB Download file

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