|
zenk-hybridizing sequences on the 20 K microarray (ordered as in Figure 1). |
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| ID |
Description |
Fold Increasea |
Raw pb |
FDRc |
Mean intensityd |
|
|
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| Canary e12 cDNA |
Replicated control |
2.0 |
1.5E-59 |
0.00 |
3661 |
| Zebra finch cDNA |
Single-spotted control |
2.1 |
2.1E-03 |
0.16 |
3602 |
| SB02047B2F12.f1 |
5'-most EST |
1.2 |
1.0E-01 |
0.35 |
9005 |
| SB03008A1H11.f1 |
Central EST |
1.7 |
3.6E-04 |
0.15 |
5551 |
| SB03026B1F05.f1 |
3'-most EST |
2.3 |
7.6E-06 |
0.05 |
4799 |
|
a. Mean of intensity ratios for song-stimulated sample divided by silence control sample (n = 6 pairs). b. P-value (uncorrected for multiple testing) of null hypothesis that song and silence groups have the same distributions, derived from a 2-stage parametric linear model (Methods). c. False Discovery Rate [81]. d. Mean of all measurements (all replicate spots against all samples); background intensities were less than 60 in all cases. | |||||
Replogle et al. BMC Genomics 2008 9:131 doi:10.1186/1471-2164-9-131 |
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