Table 3

Group-specific values for the different calculated traits

group

# of genes

GRAVY

Molecular weight

localization

motifs


min.

max.

median

min.

max.

median


AtM

2

-0.704

-0.011

-0.358

11432

29559

20496

secreted

dehydrin

10

-1.868

-0.774

-1.220

10796

29928

18881

other

[KR]-[1]-K-[DE]-K-[1]-P-G

S(5)-[DE]-x-[DE]-[GV]-x(1,4)-[GE]-x(0,1)-[KR](4)

LEA_1

3

-0.815

-1.156

-1.042

10481

16179

13850

other

LEA_2

3

-0.314

0.123

-0.045

16563

36036

17846

other

G-L-x(2)-[2]-[AILV]-x-[IV]-x-[GV]-x(2)-[PT]-x-[PS]-[ILV]-[NPST]-x(2)-[GI]

LEA_3

4

-0.790

-0.360

-0.509

9298

14418

10959

chloroplast and mitochondrion

W-x(2)-D-P-x-T-G-x-[WY]-x-P-x-[DGNST]

LEA_4

18

-1.409

-0.460

-1.035

7145

67195

26804

in all cellular compartments

-

LEA_5

2

-1.468

-1.407

-1.438

9934

16612

13273

other

G-[EQ]-T-V-V-P-G-G-T

PvLEA18

3

-1.311

-1.001

-1.059

7515

9713

8482

other

E-D-Y-K-x(2)-[AG]-Y-G-[AT]-[EQRS]-G-H

SMP

6

-0.564

-0.103

-0.307

16661

26826

19229

mostly other

-


The range and the median values for the GRAVY and molecular weight. The cellular localization based on the prediction with targetP represents the majority of the group proteins. The motifs specific for the groups were partly taken from Prosite (for dehydrins), the other motifs were build with the PRATT tool on the basis of well-defined LEA proteins belonging to these groups.

Hundertmark and Hincha BMC Genomics 2008 9:118   doi:10.1186/1471-2164-9-118

Open Data