A kingdom-specific protein domain HMM library for improved annotation of fungal genomes

doi:10.1186/1471-2164-8-97

BMC Genomics
Volume 8

Viewing options:

Abstract
Full text
PDF (379KB)
Additional files

Associated material:

Related literature:

Articles citing this article
on Google Scholar
on ISI Web of Science
on PubMed Central
Other articles by authors
on Google Scholar

Alam I
Hubbard SJ
Oliver SG
Rattray M

on PubMed

Alam I
Hubbard SJ
Oliver SG
Rattray M
Related articles/pages
on Google

on Google Scholar

on PubMed

Tools:

Post to:

Research article

A kingdom-specific protein domain HMM library for improved annotation of fungal genomes

Intikhab Alam¹ , Simon J Hubbard² , Stephen G Oliver² and Magnus Rattray¹

¹School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester M13 9PL, UK

²Faculty of Life Sciences, University of Manchester, The Michael Smith Building, Oxford Road, Manchester M13 9PT, UK

author email corresponding author email

BMC Genomics 2007, 8:97doi:10.1186/1471-2164-8-97


Published:	10 April 2007

Additional files

Additional file 1:

All detected domain families and the respective number of hits against Pfam and FPfam. A table showing frequencies of all the domains detected by both Pfam and FPfam (category A hits) or by individual libraries (category B hits), sorted based on category B^f(FPfam alone) hits.

Format: XLS Size: 564KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

Phylogenetic analysis of 35 fungal species. Phylogenetic tree relating the 35 genomes used in the study and description of methods used to construct the tree.

Format: DOC Size: 94KB Download file

This file can be viewed with: Microsoft Word Viewer