Table 3

List of Elements in the D. melanogaster genome

Cluster

Family notation from previous work

# of Intact LTRs (from previous work)

Avg. Identity between LTRs (%)

# of Solo LTRs

LTR_DM1

1731

4 (n/a, 1)

99.3

15

LTR_DM2

17.6

16 (6, 7)

99.5

29

LTR_DM3

297

38 (10, 18)

99.8

55

LTR_DM4

412

28 (18, 24)

99.8

16

LTR_DM5

bel

4 (n/a, 4)

99.6

13

LTR_DM6

blastopia

16 (6, 13)

100.0

4

LTR_DM7

blood

23 (21, 22)

99.8

16

LTR_DM8

burdock

13 (1, 7)

99.4

24

LTR_DM9

copia

30 (n/a, 26)

99.6

8

LTR_DM10

gypsy

8 (n/a, 1)

97.9

52

LTR_DM11

HMS beagle

17 (8, 9)

98.4

42

LTR_DM12

idefix

4 (n/a, 2)

98.7

69

LTR_DM13

mdg1

19 (4, 13)

99.9

23

LTR_DM14

mdg3

13 (8, 8)

99.2

16

LTR_DM15

micropia

3 (1, 2)

100.0

10

LTR_DM16

nomad

16 (4, 16)

99.9

23

LTR_DM17

roo

98 (40, 58)

99.7

96

LTR_DM18

springer

17 (n/a, 5)

99.3

75

LTR_DM19

stalker

25 (n/a, 3)

98.3

104

LTR_DM20

tirant

21 (6, 15)

99.8

32

LTR_DM21

transpac

5 (4, 5)

99.7

7

LTR_DM22

ZAM

3 (n/a, 0)

96.1

9

LTR_DM44

5

99.1

62

LTR_DM60

7

97.6

24

LTR_DM63

5

99.2

91

LTR_DM64

13

96.9

122

LTR_DM66

10

99.7

93

LTR_DM67

6

96.5

95

LTR_DM70

9

99.5

5

LTR_DM74

8

95.8

58

LTR_DM77

9

99.0

16

LTR_DM79

8

98.4

32

LTR_DM80

7

98.6

18

LTR_DM82

11

99.2

46

LTR_DM88

6

97.5

57

LTR_DM90

7

99.4

30

LTR_DM97

8

95.1

38

LTR_DM100

6

99.1

18

LTR_DM103

5

94.8

197

LTR_DM106

5

99.2

109

LTR_DM107

7

99.1

27

LTR_DM111

5

97.9

17

Rho et al. BMC Genomics 2007 8:90   doi:10.1186/1471-2164-8-90