Table 7 |
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Proteins restricted to several archaeal lineages |
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(a) Proteins only found in Thermococci, Archaeoglobus and methanogens |
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|
|
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|
PAB0076 |
[NP_125818] |
CDD15620 |
PAB1291 |
[NP_127284] |
CDD41906 |
|
PAB0138 |
[NP_125896] |
CDD9576 |
PAB1584 |
[NP_126876] |
COG4072 |
|
PAB0965 |
[NP_127127] |
CDD15705 |
PAB1860 |
[NP_126440] |
|
|
PAB19271 |
[NP_126347] |
CDD29323 |
PAB0813 |
[NP_126902] |
COG1630 |
|
PAB1994 |
[NP_126245] |
CDD9568 |
PAB0853 |
[NP_126970] |
|
|
PAB0036 |
[NP_125764] |
PAB1251 |
[NP_127332] |
endonuclease COG3780 |
|
|
PAB0054 |
[NP_125787] |
CDD41919 |
PAB1779 |
[NP_126559] |
CDD43950 |
|
PAB0176 |
[NP_125948] |
CDD43579 |
PAB18062 |
[NP_126515] |
CDD43599 |
|
PAB1127 |
[NP_127394] |
CDD30177 |
PAB2413 |
[NP_126288] |
COG1710 |
|
|
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|
(b) Proteins unique to Thermococci + Archaeoglobus |
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|
|
|||||
|
PAB0981 |
[NP_127155] |
PAB1672 |
[NP_126731] |
||
|
PAB0982 |
[NP_127156] |
PAB3017 |
[NP_125737] |
||
|
PAB0985 |
[NP_127159] |
PAB7298 |
[NP_126858] |
||
|
|
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|
(c) Proteins mainly shared by Halobacteria and some methanogens |
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|
|
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|
VNG0240C3 |
[AAG18840] |
COG4031 |
VNG2315H |
[AAG20425] |
MC1 CDD45747 |
|
VNG1236C |
[AAG19598] |
VNG2508C |
[AAG20570] |
Cyo COG4083 |
|
|
VNG1611C |
[AAG19875] |
COG4749 |
VNG2524H |
[AAG20585] |
|
|
VNG1670C |
[AAG19921] |
COG3612 |
VNG2669G |
[AAG20696] |
|
|
VNG1891H |
[AAG20086] |
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|
|
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|
(d) Proteins mainly shared by Thermoplasmata and Sulfolobus |
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|
|
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|
Ta0035 |
[NP_393514] |
COG5592 |
Ta1440 |
[NP_394894] |
|
|
Ta0164 |
[NP_393642] |
Ta1453 |
[NP_394906] |
||
|
Ta0165 |
[NP_393643] |
Ta1507 |
[NP_394957] |
CDD29645 |
|
|
Ta0267 |
[NP_393747] |
CDD43623 |
Saci_0040 |
[YP_254763] |
|
|
Ta0308 |
[NP_393788] |
Saci_0054 |
[YP_254777] |
||
|
Ta0347 |
[NP_393826] |
TauA CDD31059 |
Saci_0055 |
[YP_254778] |
|
|
Ta0547 |
[NP_394021] |
Saci_0322 |
[YP_255031] |
||
|
Ta0548m4 |
[NP_394022] |
Saci_0323 |
[YP_255032] |
||
|
Ta0583 |
[NP_394007] |
Saci_0979 |
[YP_255633] |
SdhD |
|
|
Ta0759 |
[NP_394223] |
Saci_1065 |
[YP_255715] |
||
|
Ta0793a |
[NP_394256] |
Saci_1491 |
[YP_256105] |
CDD40171 |
|
|
Ta0938 |
[NP_394396] |
Saci_1560 |
[YP_256166] |
||
|
Ta0939 |
[NP_394397] |
PQQC CDD45213 |
Saci_1747 |
[YP_256346] |
SoxE CDD46414 |
|
Ta1156 |
[NP_394612] |
Saci_1952 |
[YP_256548] |
||
|
Ta1345 |
[NP_394801] |
Saci_2078 |
[YP_256665] |
||
|
|
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|
Note 1. A homolog to PAB1927 is also found in Rubrobacter xylanophilus DSM 9941; Note 2. A homolog to PAB1806 is also found in Aquifex aeolicus VF5; Note 3. A homolog to VNG0240c is also found in Methanopyrus kandleri; Note 4. Two low-scoring homologs for Ta0548 are also found in Gloeobacter violaceus PCC 7421. |
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|
Gao and Gupta BMC Genomics 2007 8:86 doi:10.1186/1471-2164-8-86 |
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