Table 2

Percentage of overlap between LOH and copy number gains and losses.

% overlap between LOH and CNA


Gains

Losses

Cell line

SNP (%)

CGH (%)

SNP (%)

CGH (%)


CSCC1

41.3

30.2

39.4

52.1

CSCC7

13.1

14.9

72.0

92.0

CC8

17.8

16.9

4.8

18.2

CC10A

26.6

15.7

73.9

82.2

CC10B

22.1

35.4

45.6

42.4

CC11-

32.3

38.9

77.3

90.1

CC11+

9.1

6.9

57.2

87.5

CasKi

60.8

52.4

52.4

45.7

SiHa

38.1

49.6

95.7

97.0

HeLa

19.5

15.8

46.6

54.8


Average

28.1

27.7

56.5

66.2


Kloth et al. BMC Genomics 2007 8:53   doi:10.1186/1471-2164-8-53

Open Data