Table 1

Percentage of gains and losses, determined for array CGH and SNP array data.

Gains

Losses

Cell line

SNP (%)

CGH (%)

Con. (%)

SNP (%)

CGH (%)

Con. (%)


CSCC1

20.6

26.9

88.3

14.9

10.4

94.6

CSCC7

16.9

16.4

93.9

16.7

12.3

95.4

CC8

35.7

30.2

88.6

12.5

11.3

89.6

CC10A

10.3

23.5

86.9

19.7

8.2

83.4

CC10B

15.9

11.2

94.4

21.7

17.4

95.4

CC11-

16.4

13.9

92.9

2.4

1.8

99.3

CC11+

11.0

14.5

93.9

3.5

1.8

98.3

CasKi

20.7

30.5

87.6

22.6

13.8

91.1

SiHa

12.6

13.7

92.7

23.1

20.9

94.1

HeLa

30.3

24.0

86.2

5.4

3.9

98.2


Average

19.0

20.5

90.5

14.3

10.2

93.9


The percentage of concordance between both techniques is shown in the latter column of gains and losses. Abbreviations: Con. is concordance.

Kloth et al. BMC Genomics 2007 8:53   doi:10.1186/1471-2164-8-53

Open Data