Research article
Analysis of a set of Australian northern brown bandicoot expressed sequence tags with comparison to the genome sequence of the South American grey short tailed opossum
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* Corresponding author: Michelle L Baker mlbaker@unm.edu
1 Center for Evolutionary and Theoretical Immunology, Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA
2 Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA
3 Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia
BMC Genomics 2007, 8:50 doi:10.1186/1471-2164-8-50
Published: 13 February 2007Additional files
Additional file 1:
Summary of annotated Bandicoot ESTs. Table of bandicoot ESTs that match genes of known and unknown function in the public databases. Categories were assigned according to putative biological function using Gene Ontogeny and the Human Protein Reference Database [52,53]. The closest protein match to each EST according to BLASTx is indicated.
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Additional file 2:
Summary of integrated High Quality Non Coding (iHQNC) and inconsistent HQNC ESTs. Table of unmatched bandicoot ESTs that aligned to the opossum or human genomes or both. ESTs that aligned to the opossum or human genome, or both and were more than 5 kb from an annotated gene were labeled iHQNC ESTs. Those ESTs that aligned to both the human and opossum genomes, but were more than 5 kb from an annotated gene in only one species were labeled inconsistent HQNC ESTs.
Format: DOC Size: 189KB Download file
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