Conservation and divergence of microRNAs in Populus

Abdelali Barakat¹^,2 , Phillip K Wall¹ , Scott DiLoreto² , Claude W dePamphilis¹ and John E Carlson²

¹Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, 403 Life Sciences Building, The Pennsylvania State University, University Park, PA 16802, USA

²The School of Forest Resources, Department of Horticulture, and Huck Institutes of the Life Sciences, Pennsylvania State University, 323 Forest Resources Building, University Park, PA 16802, USA

author email corresponding author email

BMC Genomics 2007, 8:481doi:10.1186/1471-2164-8-481


Published:	31 December 2007

Additional files

Additional File 1:

Small RNA sequences identified from leaf. The length of each sequence and its occurrence were indicated.

Format: TXT Size: 174KB Download file

Additional File 2:

Small RNA sequences identified from vegetative buds. The length of each sequence and its occurrence were indicated.

Format: TXT Size: 162KB Download file

Additional File 3:

Conserved miRNAs identified in Populus. The length (len) of each miRNA, the number of times a sequence was sampled from leaf (L) and vegetative buds (VB), the chromosome location (Chr), the start (start) and the end (stop) position on the chromosome of each miRNA sequence, the miRNA orientation (Dir), and whether or not a miRNA was observed are indicated.

Format: XLS Size: 83KB Download file

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Additional File 4:

Non-conserved miRNAs and miRNA candidates identified in Populus. The sequence of each miRNA, the chromosme location of loci (chrom), the coordinate of the 300 nt flanking miRNA sequences are indicated.

Format: XLS Size: 26KB Download file

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