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Genes differentially expressed between near-isogenic lines that did not cluster with other iron or stress induced genes. |
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| Clone ID |
Federated Ratio |
P-Value |
Associated TIGR TC |
UniProt |
TBLASTX UniProt DB Annotation |
UniProt Blast E-Value |
|
|
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| Gm-c1028-8390 |
2.217 |
0.1037 |
BE021708 |
Q7XZ14 |
Transcription Factor DP1 |
7.00E-11 |
| Gm-c1028-6580 |
2.247 |
0.0403 |
GmTC215393 |
Q06364 |
26S Proteasome non-ATPase Regulatory Subunit |
1.00E-177 |
| Gm-c1028-4867 |
2.379 |
0.0316 |
AW831377 |
Q8RWY1 |
2OG-Fe(II) Oxygenase |
1.00E-25 |
| Gm-c1028-7485 |
2.471 |
0.0311 |
GmTC219105 |
Q940G0 |
Endomembrane Protein |
1.00E-133 |
| Gm-c1028-2190 |
2.471 |
0.0426 |
GmTC227948 |
Q6DBF6 |
Membrane Protein |
3.00E-35 |
| Gm-c1028-720 |
2.663 |
0.0065 |
GmTC227091 |
Q949M9 |
Putative arsA Homolog hASNA-1 |
1.00E-147 |
| Gm-c1004-5020 |
2.772 |
0.0241 |
GmTC225133 |
Q8JUF1 |
Large Polyprotein 2 |
0 |
| Gm-c1004-6717 |
2.788 |
0.1011 |
GmTC203969 |
Q7XYW5 |
Plant Specific Membrane Protein |
3.00E-18 |
| Gm-c1009-2578 |
2.892 |
0.0551 |
AW278268 |
No UniRef |
No UniRef Hit E < 10-4 |
NA |
| Gm-c1028-8336 |
3.087 |
0.0004 |
BE021665 |
No UniRef |
No UniRef Hit E < 10-4 |
NA |
| Gm-c1004-6231 |
3.429 |
0.0599 |
GmTC204328 |
Q3HVN0 |
Ubiquitin Conjugating Enzyme |
5.00E-59 |
| Gm-c1013-2943 |
3.435 |
0.1685 |
GmTC226909 |
Q9C9T6 |
Zinc Ring Finger Protein |
8.00E-61 |
| Gm-c1028-1850 |
3.532 |
0.0179 |
GmTC229698 |
Motif Analysis |
TIR-NBS-LRR-TIR Type Disease Resistance Protein |
NA |
| Gm-c1028-4530 |
3.532 |
0.0102 |
AW704680 |
Q1SL19 |
Nonsense Mediated Decay Protein UPF3 |
3.00E-51 |
| Gm-c1028-8658 |
3.564 |
0.0041 |
BE021924 |
Q6W5B6 |
Ethylene Receptor |
4.00E-11 |
| Gm-c1028-8183 |
3.687 |
0.2337 |
BE021484 |
Q9LR39 |
No UniRef Hit E < 10E-4 |
NA |
| Gm-c1028-3740 |
3.712 |
0.0359 |
GmTC217970 |
Q9LY38 |
Phagocytosis and Cell Motility Protein |
3.00E-32 |
| Gm-c1028-1088 |
4.181 |
0.1264 |
GmTC217285 |
Q8H9B4 |
UDP-glucosyltransferase |
1.00E-179 |
| Gm-c1028-963 |
7.149 |
0.0057 |
GmTC225698 |
Q2TE73 |
Zinc Ring Finger Protein |
1.00E-108 |
|
This list of genes represents the genes identified as differentially expressed between the NILs under iron deficient conditions which do not have sequence homology to other known stress induced genes. The sequences of these genes also showed no homology to other genes induced by iron deficiency and differentially expressed between the NILs. The clone ID identifies the specific clone spotted on the microarray. The Federated Ratio is the fold change between the two near isogenic lines. Fold changes above 2 represent genes over-expressed in the iron inefficient plant compared to the iron efficient plant while fold changes below 0.5 represent genes under-expressed in the iron inefficient plant compared to the iron efficient plant. The TIGR TC represents the tentative consensus sequence to which the clone ID belongs according to TIGR. The UNIPROT annotation is the identified function of genes showing high similarity to the sequence of the TIGR TCThe E-value is the association of the annotation to the TIGR TC sequence. | ||||||
O'Rourke et al. BMC Genomics 2007 8:476 doi:10.1186/1471-2164-8-476 |
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