Table 2

The fifteen longest TFRs in zebrafish

TFR ID

Genomic position

Size (bp)

Overlapping genes^a

TFR in human^b

dr23.144

chr23:35,638,710-35,705,409

66,700

hoxc5a-11a

Yes

dr3.77

chr3:22,940,664-22,984,418

43,755

hoxb2a-4a

Yes

dr19.54

chr19:13,924,211-13,955,334

31,124

hoxa1a-5a

Yes

dr4.159

chr4:16,685,114-16,714,306

29,193

plxna4

No

dr5.225

chr5:57,548,679-57,577,252

28,574

nr2f1

Yes

dr15.69

chr15:25,034,169-25,061,004

26,836

-

-

dr3.89

chr3:24,406,349-24,432,207

25,859

IGF2BP3

Yes

dr3.78

chr3:22,984,979-23,010,566

25,588

hoxb5a-b8a

Yes

dr4.190

chr4:18,669,203-18,694,678

25,476

sox5

Yes

dr6.213

chr6:59,099,468-59,123,108

23,641

barhl2

Yes

dr2.134

chr2:31,040,372-31,063,335

22,964

ptc1

Yes

dr24.53

chr24:17,570,229-17,592,632

22,404

bmi1, commd3

Yes

dr23.116

chr23:31,417,962-31,439,642

21,681

MLL2

No

dr9.78

chr9:21,302,333-21,323,748

21,416

ZFHX1B

Yes

dr15.179

chr15:41,033,477-41,054,729

21,253

tbx2b

Yes

^a Zebrafish genes are listed in lower case italic; human proteins mapped to corresponding loci in the zebrafish genome are given in upper case.

^b The orthologous gene in human overlaps a TFR ≥ 10 kb.

Simons et al. BMC Genomics 2007 8:470   doi:10.1186/1471-2164-8-470