Table 4 |
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|
Summary statistics for SNPs and indels in introns of 12 lines of tomato. |
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|
Loci with SNPs |
Number of SNPs |
% Loci with SNPs |
SNPs/locus |
Bases/SNP1 |
Loci with indels2 |
Number of indels |
% Loci with indels |
Indels/locus |
Bases/indel1 |
|
|
|
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|
Total |
302 |
1487 |
31.2 |
4.9 |
641 |
153 |
282 |
16 |
1.8 |
3378 |
|
S. lycopersicum |
243 |
980 |
25.1 |
4.0 |
973 |
139 |
248 |
14 |
1.8 |
3841 |
|
Breeding lines3 |
162 |
579 |
16.7 |
3.6 |
1647 |
122 |
206 |
13 |
1.7 |
4624 |
|
US Fresh Market |
53 |
168 |
5.5 |
3.2 |
5675 |
106 |
158 |
11 |
1.5 |
6028 |
|
Processing |
121 |
402 |
12.5 |
3.3 |
2372 |
118 |
193 |
12 |
1.6 |
4935 |
|
var cerasiformae |
161 |
586 |
16.6 |
3.6 |
1627 |
98 |
154 |
10 |
1.6 |
6185 |
|
S. pimpinellifolium |
275 |
1121 |
28.4 |
4.1 |
851 |
98 |
152 |
10 |
1.6 |
6266 |
|
|
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|
1Adjusted for % polymorphic loci and average contig length of 985 bp 2Thirteeen loci have indels and no SNPs 3Includes fresh market, processing and heirloom |
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|
Van Deynze et al. BMC Genomics 2007 8:465 doi:10.1186/1471-2164-8-465 |
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