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Origin of the 24 cyanobacterial genome sequences that were used to perform the bioinformatic evaluation of the presence of L-arginine-degrading pathways in cyanobacteria. |
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| Cyanobacterial strain |
Origin of genome sequence* |
Reference sequence |
GenBank |
Mbps |
%GC |
Proteins/RNAs |
|
|
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| Marine species |
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|
|
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| Prochlorococcus marinus SS 120 |
European Union/Genoscope |
NC_005042 |
AE017126 |
1.75 |
36.4 |
1883/46 |
| Prochlorococcus marinus MIT 9211 |
Craig Venter Institute |
NZ_AALP00000000 |
AALP00000000 |
1.84 |
39.7 |
2123/45 |
| Prochlorococcus marinus MIT 9312 |
JGI/MIT/DOE |
NC_007577 |
CP000111 |
1.71 |
31.2 |
1810/45 |
| Prochlorococcus marinus MIT9313 |
JGI/DOE |
NC_005071 |
BX548175 |
2.41 |
50.7 |
2269/55 |
| Prochlorococcus marinus MED 4 |
JGI/DOE |
NC_005072 |
BX548174 |
1.70 |
30.8 |
1717/44 |
| Prochlorococcus marinus NATL 2A |
JGI/MIT/DOE |
NC_007335 |
CP000095 |
1.84 |
35.1 |
1892/44 |
| Synechococcus sp. WH 8102 |
JGI/DOE |
NC_005070 |
BX548020 |
2.44 |
59.4 |
2519/55 |
| Synechococcus sp. CC 9902 |
JGI/DOE |
NC_007513 |
CP000097 |
2.24 |
54.2 |
2307/51 |
| Synechococcus sp. RS 9917 |
Craig Venter Institute |
NZ_AANP00000000 |
AANP00000000 |
2.58 |
64.5 |
2770/50 |
| Synechococcus sp. CC 9605 |
JGI/DOE |
NC_007516 |
CP000110 |
2.51 |
59.2 |
2645/54 |
| Synechococcus sp. WH 5701 |
Craig Venter Institute |
NZ_AANO00000000 |
AANO00000000 |
3.04 |
65.4 |
3346/55 |
| Synechococcus sp. WH 7805 |
Craig Venter Institute |
NZ_AAOK00000000 |
AAOK00000000 |
2.62 |
57.6 |
2883/51 |
| Trichodesmium erythraeum IMS 101 |
WHOI/JGI/DOE |
NC_008312 |
CP000393 |
7.75 |
34.1 |
4451/48 |
| Crocosphaera watsonii WH 8501 |
WHOI/JGI/DOE |
NZ_AADV00000000 |
AADV00000000 |
6.24 |
37.1 |
5958/38 |
|
|
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| Freshwater species |
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|
|
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| Synechococcus elongatus PCC 6301 |
Nagoya University |
NC_006576 |
AP008231 |
2.70 |
55.5 |
2527/55 |
| Synechococcus elongatus PCC 7942 |
JGI/Texas A & M University/DOE |
NC_007604 |
CP000100 |
2.70 |
55.5 |
2612/53 |
| Synechocystis sp. PCC 6803 |
Kazusa DNA Research Institute |
NC_000911 |
BA000022 |
3.57 |
47.7 |
3172/50 |
| Gloeobacter violaceus PCC 7421 |
Kazusa DNA Research Institute |
NC_005125 |
BA000045 |
4.66 |
62.0 |
4430/52 |
| Nostoc sp. PCC 7120 |
Kazusa DNA Research Institute |
NC_003272 |
BA000019 |
6.41 |
41.3 |
5366/64 |
| Nostoc punctiforme PCC 73102 |
JGI/DOE |
NZ_AAAY00000000 |
AAAY00000000 |
9.02 |
41.4 |
7672/n.d. |
| Anabaena variabilis ATCC 29413 |
Missouri State University/JGI/DOE |
NC_007413 |
CP000117 |
6.37 |
41.4 |
5043/62 |
| Thermosynechococcus elongatus BP-1 |
Kazusa DNA Research Institute |
NC_004113 |
BA000039 |
2.59 |
53.9 |
2476/49 |
| Synechococcus Yellowstone A JA-3-3Ab |
TIGR |
NC_007775 |
CP000239 |
2.93 |
60.2 |
2760/55 |
| Synechococcus Yellowstone B JA-2-3B'a (2–13) |
TIGR |
NC_007776 |
CP000240 |
3.05 |
58.5 |
2862/52 |
|
*JGI, Joint Genome Research Institute; DOE, Department of Energy USA; WHOI, Woods Hole Oceanographic Institute; MIT, Massachusetts Institute of Technology; TIGR, The Institute for Genomic Research. The strain Prochlorococcus marinus SS 120 corresponds to Prochlorococcus marinus subsp. marinus str. CCMP 1375 and strain Prochlorococcus marinus MED 4 corresponds to Prochlorococcus marinus subsp.pastoris str. CCMP 1986 or CCMP 1378. Nostoc sp. PCC 7120 is synonymous to Anabaena sp. PCC 7120 as well as Anabaena cylindrica. N.d. = not detected. | ||||||
Schriek et al. BMC Genomics 2007 8:437 doi:10.1186/1471-2164-8-437 |
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