Table 7

Transcripts (TFR pool) related to Energy metabolism within specific sub-sections
Probeset ID	GenBank Annotation	VvGI5	Uniprot ID	Gene Name Description	Function	Profile	Fold Change

1612882_at	CD720949	TC64621	A5BS41	ATP-dependent transmembrane transporter	ATP binding	2	5.55
1612645_at	CB344170	TC55708	P32980	ATP synthase	ATP binding	3	3.59
1616533_at	CB339497	TC62259	P31853	ATP synthase B' chain	ATP binding	12	2.88
1618182_at	CF604629	TC63054	P19023	ATP synthase beta chain	ATP binding	21	2.23
1607759_at	CD798264	TC67523	Q43433	Vacuolar ATP synthase subunit B isoform 2	ATP binding	11	2.16
1620500_at	CB349662	CB349662	Q67IU5	Ribulose 1,5-bisphosphate carboxylase small subunit	Carbon dioxide fixation	3	19.73
1613936_x_at	CF568996	CF568996	O22077	Ribulose bisphosphate carboxylase small chain	Carbon dioxide fixation	3	2.36
1616918_s_at	CB345541	TC56391	Q40281	Rubisco activase	Carbon dioxide fixation	3	2.22
1619681_at	CD799678	TC70996	Q9C5C7	Rubisco expression protein	Carbon dioxide fixation	11	2.18
1612848_x_at	CF202280	CF202280	P10795	Ribulose bisphosphate carboxylase	Carbon dioxide fixation	3	2.13
1620551_s_at	CB339855	TC56836	O98997	Rubisco activase	Carbon dioxide fixation	3	2.13
1610491_at	CD010750	TC57419	Q8LF17	Ribulose-1,5-bisphosphate carboxylase/oxygenase	Carbon dioxide fixation	12	2.13
1616847_s_at	CA816751	TC68454	O22077	Ribulose bisphosphate carboxylase small chain	Carbon dioxide fixation	3	2.12
1616435_at	CB974220	TC68219	P08927	RuBisCO subunit binding-protein beta subunit	Carbon dioxide fixation	3	2.1
1622299_s_at	CK136935	CK136935	Q9LKH8	NADPH-protochlorophyllide oxidoreductase	Chlorophyll biosynthesis	3	5.3
1619717_at	CF210684	TC59048	Q9SDT1	NADPH:protochlorophyllide oxidoreductase	Chlorophyll biosynthesis	3	4.79
1606624_at	CF606923	TC64589	Q43082	Porphobilinogen deaminase	Chlorophyll biosynthetic process	1	2.5
1617935_at	CB974545	TC68056	Q7YJS8	NADH dehydrogenase 49kDa subunit	Complex 1	16	5.55
1611418_at	CB342953	TC56161	Q7YJ08	NAD(P)H-quinone oxidoreductase	Complex 1	14	5.09
1609373_at	CD800734	TC60468	Q6KGY1	NADH dehydrogenase	Complex 1	14	3.05
1614095_at	CF606244	TC62268	P06261	NAD(P)H-quinone oxidoreductase	Complex 1	21	2.83
1609421_at	BQ795266	TC62811	O65414	NADH dehydrogenase	Complex 1	11	2.75
1617757_at	CA818465	TC58524	Q6YSN0	NADH dehydrogenase	Complex 1	21	2.42
1612005_s_at	CB004075	TC64671	Q68S01	NADH dehydrogenase	Complex 1	3	2.27
1610869_at	CF515388	TC56269	Q8H2T7	NADH dehydrogenase subunit	Complex 1	16	2.23
1610347_s_at	CF202826	CF202826	Q0ZIW2	NAD(P)H-quinone oxidoreductase	Complex 1	10	2.1
1609391_s_at	CF404650	TC53103	Q41001	Copper Binding Protein	Copper ion binding	2	26.11
1620588_at	CD801157	CD801157	Q8LED5	Mavicyanin	Copper ion binding	6	25.27
1621220_at	CB919187	TC59624	Q9M510	Dicyanin	Copper ion binding	11	17.36
1610220_at	CB973621	TC68272	O81500	Copper Binding Protein	Copper ion binding	3	14.36
1617350_at	CB975555	TC58747	Q39131	Copper Binding Protein	Copper ion binding	3	10.21
1611332_at	CF371813	TC59560	Q653S5	Blue copper binding protein (bcb)	Copper ion binding	1	7.64
1607270_at	CB923224	TC60083	Q9ZRV5	Copper Binding Protein	Copper ion binding	2	5.87
1620744_at	CF403966	TC65998	P17340	Plastocyanin, chloroplast precursor	Copper ion binding	3	4.41
1617046_at	CF512505	TC54856	O23230	Trichohyalin	Copper ion binding	3	2.23
1609233_at	CF512410	TC54170	Q84RM1	Copper Binding Protein	Copper ion binding	2	2.21
1618207_at	CB347324	TC52865	Q9C540	Cytochrome 561	Electron carrier activity	3	7.45
1612624_at	CB974055	TC58854	P06449	Apocytochrome f	Electron carrier activity	21	5.32
1611598_at	CB970208	TC60594	Q9ZSR3	Cytochrome b-561	Electron carrier activity	2	4.54
1606617_at	CF608010	TC65350	O23344	Electron transport	electron carrier activity	3	2.49
1606704_s_at	CF200937	CF200937	P59702	Cytochrome b559 alpha subunit	Electron carrier activity	21	2.33
1615927_s_at	CB972155	TC55109	Q6Q8B8	Chloroplast ferredoxin I	Electron carrier activity	3	2.23
1607800_at	CB972521	TC52149	Q84WN3	Cytochrome c oxidoreductase	Electron transport	2	17.79
1620504_at	CB342755	TC52829	Q84WN3	cytochrome c oxidoreductase	Electron transport	7	14.78
1618535_at	CA818656	CA818656	Q6V5G1	Cu2+ plastocyanin	Electron transport	13	6.25
1615046_at	CF210436	TC59116	P41346	Ferredoxin--NADP reductase	Electron transport	3	5.61
1614266_at	BQ792322	TC57184	Q49KU9	Cytochrome c heme attachment protein	Electron transport	16	4.17
1613158_at	CB349843	CB349843	O47437	Cytochrome c oxidase	Electron transport	16	3.56
1612766_s_at	CF569219	CF569219	Q5PY86	NADH-cytochrome b5 reductase	Electron Transport	3	3.32
1619756_at	CB003378	TC59085	Q9LYC6	Glutaredoxin	Electron transport	14	2.88
1620991_at	CB344999	TC58191	O24068	Cytochrome oxidase subunit 3	Electron transport	16	2.26
1606445_a_at	CF512668	TC62694	P26291	Cytochrome B6-F complex iron-sulfur subuni	Electron transport	3	2.16
1608372_at	CF208491	TC51964	Q6K7S7	Cytochrome c biogenesis	Electron transport	9	2.1
1621402_a_at	CF213496	TC53161	P00051	Cytochrome c	Electron transport	11	2.01
1607356_at	CB911288	TC67262	Q8LCF6	Hypothetical Protein	ENERGY	11	12.28
1611972_s_at	CF519112	TC53292	A4X6H5	Cytochrome b	ENERGY	3	11.63
1615762_at	CD798079	TC66865	O80763	Hypothetical Protein	ENERGY	10	4.82
1616241_at	CD797326	CD797326	Q8VYC5	Hypothetical Protein	ENERGY	16	4.08
1609285_at	CF414528	TC57440	Q9FFT2	Hypothetical Protein	ENERGY	2	3.44
1611820_at	CB914713	TC69253	O80763	Hypothetical Protein	ENERGY	3	3.09
1606562_at	CF404246	TC59415	A3J369	Nitrilase 1	ENERGY	11	3.04
1621817_at	CB978007	TC64650	O80763	Hypothetical Protein	ENERGY	3	3
1614875_at	CF518552	TC69033	A5AU55	Hypothetical Protein	ENERGY	11	2.73
1622517_at	CB970523	TC54809	Q8W4Z5	Hypothetical Protein	ENERGY	3	2.39
1621903_at	CF404558	TC62294	Q9FE29	Hypothetical Protein	ENERGY	13	2.23
1612648_at	CD798203	CD798203	O80763	Hypothetical Protein	ENERGY	21	2.15
1622345_at	CB970837	TC55633	Q7XTZ0	Mandelonitrile lyase	Flavoprotein	2	4.87
1606948_at	CF404230	CF404230	Q01JW7	Mandelonitrile lyase	Flavoprotein	2	3.68
1622745_at	BQ796736	TC58626	Q8L5Q7	Quinone oxidoreductase	FMN binding	15	19.63
1615481_at	CB973026	TC62178	Q9ZSP7	Cytochrome b5 DIF-F	Iron ion binding	3	2.57
1606727_at	BQ799998	TC62672	Q58IV4	Phytochrome C	Light Signaling	10	2.38
1617604_at	CF609932	TC59809	Q94BM7	Phytochrome A supressor spa1 protein	Light Signaling	11	2.25
1611135_at	CB983077	TC51911	Q9SG92	Alpha-hydroxynitrile lyase	Lyase activity	11	2.92
1622108_at	CF405863	TC56579	Q9SU40	Monocopper oxidase	Multicopper oxidase family	3	23.07
1621115_at	CF609165	TC64136	Q9SU40	Monocopper oxidase	Multicopper oxidase family	1	20.1
1617992_a_at	CF213671	TC60094	P51132	Ubiquinol--cytochrome-c reductase-like protein	Oxidative Phosphorespiration	11	2.18
1611597_at	CB918250	CB918250	Q8LDU4	Red chlorophyll catabolite reductase	Oxidoreductase activity	12	2.03
1613786_at	CD714955	TC57282	Q6QY10	P700 chlorophyll a apoprotein A1	Photosystem I	21	8.65
1611364_at	CF211293	TC52528	Q9XQB4	Reaction center subunit III	Photosystem I	3	7.67
1611464_at	CF215949	TC59235	Q9XF85	Lhca5 protein	Photosystem I	3	7.21
1621532_at	CB973721	TC64270	Q84QE6	Reaction center subunit X psaK	Photosystem I	3	7.15
1619903_at	CD720479	TC65556	Q40512	Light-harvesting chlorophyll a/b-binding protein	Photosystem I	3	6.96
1619629_at	CB340944	TC66352	Q5DNZ6	Chlorophyll a-b binding protein	Photosystem I	3	6.59
1622534_at	BQ799942	TC53444	Q84U30	Photosystem I-N subunit	Photosystem I	3	6.45
1611733_s_at	BQ797982	TC52546	Q70PN9	Reaction centre PSI-D subunit precursor	Photosystem I	3	6.44
1616560_at	CA817733	TC62550	Q84WT1	Light-harvesting chlorophyll a/b binding protein	Photosystem I	3	5.9
1611515_s_at	CB343423	TC57304	O65101	Reaction center subunit VI	Photosystem I	3	5.33
1618370_at	CF510718	TC57721	Q9SUI4	Reaction center subunit XI	Photosystem I	3	5.31
1617771_at	CF414158	TC58342	Q8RVJ8	Reaction centre subunit IV	Photosystem I	3	4.87
1618127_at	CB968637	TC62932	Q9SY97	Chlorophyll a/b-binding protein	Photosystem I	3	4.74
1614409_at	CA817387	TC55189	P13869	Chlorophyll a-b binding protein	Photosystem I	3	4.65
1614593_at	CF511805	TC52379	Q00321	CP29 polypeptide	Photosystem I	3	4.43
1611924_at	CA817406	TC63702	Q646H3	Reaction center V	Photosystem I	3	4.06
1611161_at	CF210442	TC54044	Q9ZU86	Expressed protein	Photosystem I	3	3.09
1622302_s_at	CF207602	TC54765	Q40459	Oxygen-evolving enhancer protein 1	Photosystem I	3	2.8
1610245_at	CF209798	TC53968	Q41424	Chlorophyll a/b binding protein	Photosystem II	3	15.82
1615822_at	CF208321	TC52049	Q9XQB1	LHCII type III chlorophyll a/b binding protein	Photosystem II	3	10.43
1608311_at	CF202519	CF202519	Q7M1K9	Chlorophyll a/b-binding protein	Photosystem II	3	10.24
1616940_s_at	CB348709	TC52113	Q7M1K9	Chlorophyll a/b-binding protein	Photosystem II	3	9.95
1618116_s_at	BQ798823	TC55659	Q32291	Chlorophyll A/B binding protein precursor	Photosystem II	3	7.28
1611860_at	CF209952	TC57521	Q9XQB6	Chlorophyll a/b-binding protein CP24	Photosystem II	3	6.6
1612085_at	CF413799	TC54542	Q41387	Reaction center W protein	Photosystem II	3	5.79
1621038_at	CF372077	TC57214	O64448	Light harvesting chlorophyll a/b-binding protein precursor	Photosystem II	3	5.77
1618679_s_at	CB343106	TC52042	Q9BBT1	44 kDa reaction center protein	Photosystem II	16	5.41
1610203_at	CD009386	TC56267	Q7YJY8	Photosystem Q(B) protein	Photosystem II	21	5.11
1613991_at	CF510955	TC53743	P80470	Core complex proteins psbY	Photosystem II	3	4.77
1607516_at	CB972913	TC53930	Q9LRC4	Oxygen evolving enhancer protein 1 precursor	Photosystem II	3	4.66
1613428_at	CF207158	TC52084	Q5PYQ5	Chloroplast oxygen-evolving enhancer protein	Photosystem II	3	4.47
1607961_at	CF415716	TC57429	P31336	5 kDa protein	Photosystem II	3	4.16
1614598_at	CF373065	TC61762	Q9XQB2	Chlorophyll a/b binding protein CP29	Photosystem II	3	4.06
1613691_s_at	CF511746	TC54828	P27518	Chlorophyll a-b binding protein 151	Photosystem II	3	3.84
1613773_s_at	BQ799145	TC63656	Q41387	Reaction center W protein	Photosystem II	3	3.34
1618031_s_at	CF404451	TC53833	Q8GV53	10 kDa protein	Photosystem II	3	3.28
1621351_s_at	CB340283	TC53732	Q40961	Light-harvesting chlorophyll a/b-binding protein precursor	Photosystem II	3	3.2
1613494_s_at	CA813944	TC55522	Q9SLQ8	Oxygen-evolving enhancer protein 2	Photosystem II	3	3.05
1617605_at	CF513977	TC55526	Q8HS34	CP47 protein	Photosystem II	18	2.99
1618274_at	CB972471	TC55538	Q4FFQ9	Phosphoprotein	Photosystem II	21	2.92
1610144_at	CB342508	TC53591	Q9MTN0	Uncharacterized 6.9 kDa protein in psbD-trnT intergenic region	Photosystem II	15	2.88
1611582_s_at	CB970190	TC70959	Q02060	22 kDa protein	Photosystem II	3	2.69
1607926_at	CF202256	CF202256	Q9AR57	Putative membrane protein	Photosystem II	2	2.56
1621978_at	CB837910	TC56626	Q9M3M7	Uncharacterized protein	Photosystem II	16	2.31
1607803_at	CB975690	TC52112	Q06364	26S proteasome non-ATPase regulatory subunit 3	Photosystem II	21	2.31
1619523_at	CB969438	TC67627	Q952R1	Succinate dehydrogenase	Succinate dehydrogenase activity	15	2.24

Deluc et al. BMC Genomics 2007 8:429 doi:10.1186/1471-2164-8-429