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Open Access Research article

Promoter analysis of intestinal genes induced during iron-deprivation reveals enrichment of conserved SP1-like binding sites

James F Collins1 and Zihua Hu2

Author Affiliations

1 Department of Exercise and Nutrition Sciences, University at Buffalo, the State University of New York, Buffalo, NY, USA

2 Center for Computational Research, New York State Center of Excellence in Bioinformatics & Life Sciences, and the Department of Biostatistics, University at Buffalo, the State University of New York, Buffalo, NY, USA

BMC Genomics 2007, 8:420  doi:10.1186/1471-2164-8-420

Published: 15 November 2007

Additional files

Additional file 1:

228 Up-Regulated Gene Cluster From the 6 Iron-Deficient Experimental Groups. This table includes the information about the genes in the 228 upregulated cluster and indicates which species promoters were identified from for each gene.

Format: PDF Size: 19KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Gene Alignments with Sp1 and Fox and Sp1 binding sites. This file shows sequence alignments of genes in the upregulated gene cluster that have conserved Sp1 and FOX binding sites.

Format: PDF Size: 32KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data