Table 3

Orphan HK and RR genes in the genomes of P. syringae pv. syringae B728a, pv. tomato DC3000 and pv. phaseolicola 1448A.

P. syringae pv. syringae B728a

P. syringae pv. tomato DC3000

P. syringae pv. phaseolicola 1448A

HK/RR type


Orphan HKs

PSYR1918

PSPTO2123

PSPPH1874

GAF-HK

PSYR2978

PSPTO3111

PSPPH2262

IC

PSYR3060

PSPTO3195

PSPPH2185

IC

PSYR3504/BphP1

PSPTO1902

PSPPH3446

GAF-HK

PSYR3591

PSPTO1803

PSPPH3550

IA

PSYR3773

PSPTO1606

PSPPH1480

GAF-HK

PSYR3774

PSPTO1605

PSPPH1479

GAF-HK

PSYR4089

PSPTO4395

PSPPH4095

IC

PSYR4339

PSPTO4796

PSPPH4381

IB

PSYR4373

PSPTO4833

PSPPH4416

IC

PSYR4439

PSPTO4896

PSPPH4481

GAF-HK

Orphan RRs

PSYR0089

PSPTO0303

PSPPH0094

Stand-alone REC

PSYR0488/PilG

PSPTO5034

PSPPH0479

Stand-alone REC

PSYR0489/PilH

PSPTO5033

PSPPH0480

Stand-alone REC

PSYR0509

PSPTO5014

PSPPH0499

PleD-like

PSYR0781/CheB1

PSPTO0908

PSPPH0800

CheB-like

PSYR0886

PSPTO1039

PSPPH0923

CheC-like

PSYR1098

PSPTO1278

PSPPH1166

PleD-like

PSYR1139

PSPTO1323

PSPPH1207

CheW-like

PSYR1190/HrpR

PSPTO1379

PSPPH1270

NtrC-like

PSYR1191/HrpS

PSPTO1380

PSPPH1271

NtrC-like

PSYR1293

PSPTO1483

PSPPH1363

VieA-like

PSYR1294

PSPTO1484

PSPPH1364

NarL-like

PSYR1308/CheB2

PSPTO1498

PSPPH3876

CheB-like

PSYR1309/WspR

PSPTO1499

PSPPH3875

PleD-like

PSYR1384

PSPTO4027

PSPPH3800

NarL-like

PSYR1912

PSPTO2117

PSPPH1867

RsbU-like

PSYR1938

PSPTO2128

PSPPH1904

Stand-alone REC

PSYR2114

--

--

NarL-like

PSYR2115

PSPTO2330

--

Stand-alone REC

PSYR2449

PSPTO2716

PSPPH2605

Stand-alone REC

PSYR2897/GacA

PSPTO3024

PSPPH2328

NarL-like

PSYR2939

--

--

AmiR-like

PSYR3091

PSPTO3245

PSPPH2995

OmpR-like

PSYR3299

PSPTO3526

PSPPH3220

NarL-like

PSYR3433/CheB3

PSPTO1983

PSPPH3359

CheB-like

PSYR3451

PSPTO1964

PSPPH3377

RsbU-like

PSYR3461/FleQ

PSPTO1954

PSPPH3387

NtrC-like

PSYR3486

PSPTO1927

PSPPH3413

CheW-like

PSYR3496

PSPTO1911

PSPPH3428

VieB-like

PSYR3589

PSPTO1806

PSPPH3547

OmpR-like

PSYR3890

PSPTO4151

PSPPH1374

NarL-like

PSYR4376

PSPTO4836

PSPPH4419

NarL-like

PSYR4377

PSPTO4837

PSPPH4420

PleD-like

PSYR4388

PSPTO4848

PSPPH4431

Stand-alone REC

PSYR4701

PSPTO0472

PSPPH4737

Stand-alone REC

PSYR5036

PSPTO5482

PSPPH5118

Stand-alone REC

--

PSPTO0897

PSPPH4241

NarL-like

--

PSPTO2329a

--

Stand-alone REC

--

PSPTO4080

--

NarL-like

--

PSPTO4706/CorP

--

NarL-like

--

--

PSPPH0778

NarL-like


a Genes with disrupted reading frames.

LavĂ­n et al. BMC Genomics 2007 8:397   doi:10.1186/1471-2164-8-397

Open Data