MetaProm: a neural network based meta-predictor for alternative human promoter prediction1 Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA 19104, USA 2 Department of Genetics, University of Pennsylvania, Philadelphia, PA 19104, USA 3 Department of Computer and Information Science, University of Pennsylvania, Philadelphia, PA 19104, USA 4 Core Genotyping Facility, Advanced Technology Program, SAIC-Frederick, Frederick, MD 21702, USA 5 Division of Cancer Epidemiology and Genetics, NCI, NIH, Bethesda, MD 20892, USA 6 Department of Dermatology, University of Pennsylvania, Philadelphia, PA 19104, USA 7 Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104, USA 8 Center for Research on Reproduction and Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA
BMC Genomics 2007, 8:374doi:10.1186/1471-2164-8-374
Additional filesAdditional file 1: Distances between alternative TSSs within a sequence. Format: DOC Size: 24KB Download file This file can be viewed with: Microsoft Word Viewer Additional file 2: Distance between Transcription Start Site (TSS) and CpG island (annotated in UCSC). Format: DOC Size: 24KB Download file This file can be viewed with: Microsoft Word Viewer Additional file 3: Pairwise overlaps of correct predicted promoters between each PPP at high (50 bp) and low (2 kb) resolutions. Format: DOC Size: 102KB Download file This file can be viewed with: Microsoft Word Viewer Additional file 4: Evaluation of MetaProm at high and low resolutions on genomewide promoter prediction. Format: DOC Size: 172KB Download file This file can be viewed with: Microsoft Word Viewer Additional file 5: Features used for ANN based MetaProm promoter prediction. Format: DOC Size: 54KB Download file This file can be viewed with: Microsoft Word Viewer |




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