|
Sequence characteristics of unannotated clones |
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| Clone |
Accession |
Length (bp) |
ORF (%)* |
Degree of Conservation |
Spliced |
polyA |
Nearest SAGE Tag |
Distance to SAGE (kb) |
Chromosome Position |
Description |
|
|
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| 11_B09 |
DQ668378 |
306 |
25.2 |
+† |
no |
no |
CCAATCTTTAACTTCCT |
8.3 |
2q31.3 |
100 kb from mRNA AK000023 |
| 11_E05 |
DQ668379 |
1338 |
8.1 |
+ |
no |
no |
GCATTTTATTTTTTAAG |
1.9 |
15q11.2 |
4 kb from mRNA AL832227 |
| 12_A03 |
DQ668380 |
543 |
46.8 |
+ |
no |
no |
GTTCTCTGATTCCTAAG |
14.5 |
2q31.3 |
50 kb from EST CF140309 |
| 12_A06 |
DQ668381 |
324 |
39.2 |
+ |
no |
no |
TGCAGGAGACTAGCAAG |
11.6 |
2q32.3 |
Intron of TMEFF2 |
| 12_E10 |
DQ668383 |
576 |
46.7 |
+ |
no |
no |
No tag in clone |
N/A |
22q13.2 |
8 kb from mRNA BX648018 |
| 13_F09 |
DQ668384 |
454 |
50.7 |
+ |
no |
yes |
AGCCTCCTCCTCTCCTT |
6.4 |
21q21.1 |
Intron of NCAM2 |
| 13_G01 |
DQ668385 |
261 |
41.0 |
+ |
no |
yes |
ATTTTCATTGCTTTTAT |
7.2 |
18q22.3 |
Intron of NETO1 |
| 13_G06 |
DQ668386 |
389 |
32.1 |
+ |
no |
yes |
GAACAAAGACAGATATG |
2.0 |
8q22.3 |
Intron of GRHL2 |
| 14_D01 |
DQ668387 |
134 |
77.6 |
+++ |
no |
no |
ATTTTATGGTTATTATT |
8.7 |
3p14.2 |
Intron of FHIT |
| 1a_A04 |
EC093934 |
245 |
25.3 |
+ |
no |
no |
No tag in clone |
N/A |
21q21.1 |
Intron of NCAM2 |
| 1a_C02 |
DQ668388 |
1853 |
12.4 |
++ |
no |
no |
TCTTACTTTTTCATTAG |
2.2 |
5q23.1 |
Intron of TNFAIP8 |
| 1a_E09 |
DQ668389 |
796 |
29.5 |
+ |
no |
no |
TCAGATTTTGGATATCC |
1.9 |
10p12.31 |
Intron of NEBL |
| 1b_C12 |
DQ668390 |
555 |
16.8 |
+ |
no |
no |
GGATGGGATCAAGAGAG |
17.5 |
14q12 |
Intron of PRKD1 |
| 1c_D03 |
DQ668391 |
292 |
18.5 |
+ |
no |
no |
No tag in clone |
N/A |
21q21.1 |
Intron of NCAM2 |
| 1c_E10 |
DQ668392 |
679 |
14.9 |
+ |
no |
no |
TACTTACGATTTTTCAG |
0.0 |
8q22.1 |
Intron of DKFZp779L1068 |
| 1c_F02 |
DQ668393 |
475 |
26.7 |
+ |
no |
no |
TTCTAGCTCCATTGACT |
1.8 |
8p11.22 |
Intron of ADAM2 |
| 1d_E01 |
DQ668394 |
771 |
26.7 |
+ |
no |
no |
TATACAACTGTAGATGC |
0.15 |
16q12.1 |
Intron of CDA08 |
| 1d_F04 |
DQ668395 |
465 |
21.9 |
+++ |
no |
yes |
No tag in clone |
N/A |
5q21.3 |
Intron of EFNA5 |
| 2c_A06 |
EC094025 |
658 |
10.8 |
++ |
no |
no |
No tag in clone |
N/A |
20p12.1 |
Intron of DSTN |
| 2c_C10 |
DQ668396 |
371 |
28.0 |
++ |
no |
yes |
TTCTAGCTCCATTGACT |
6.4 |
8p11.22 |
Intron of ADAM2 |
| 2c_G10 |
DQ668397 |
969 |
19.8 |
+ |
no |
no |
TCAATGGAGGATGATAG |
0.24 |
4q23 |
Intron of PPP3CA |
| 2d_B01 |
DQ668398 |
1100 |
15.2 |
+ |
no |
no |
GAATCTGGATAAAGACT |
0.0 |
10q21.1 |
87 kb from EST BG194644 |
| 2d_D06 |
DQ668399 |
598 |
37.0 |
+ |
no |
yes |
TTGTAACAAGTTAGTAA |
0.0 |
12p13.2 |
Intron of mRNA K03207 |
| 2d_D09 |
EC094055 |
627 |
26.6 |
+ |
no |
no |
GCAACACTGCACTCCAG |
8.8 |
12q21.31 |
Intron of PPFIA2 |
| 2d_E01 |
DQ668400 |
722 |
34.8 |
+ |
no |
no |
CAGAAAAAACAAAACAG |
23.2 |
8q24.23 |
Intron of EST BQ226050 |
|
* Length of longest open reading frame as a percentage of the total length of each clone. † Degree of conservation of each clone: + = 0–9%; ++ = 10–29%; +++ = 30–59%; ++++ = 60–79%; and +++++ = 80–100% conservation. | ||||||||||
Quayle et al. BMC Genomics 2007 8:32 doi:10.1186/1471-2164-8-32 |
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