Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni

doi:10.1186/1471-2164-8-317

BMC Genomics

Volume 8

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Research article

Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni

Simone Hoegg¹ , Jeffrey L Boore²^,3 , Jennifer V Kuehl² and Axel Meyer¹

¹Lehrstuhl für Evolutionsbiologie und Zoologie, Department of Biology, University of Konstanz, 78457 Konstanz, Germany

²Program in Evolutionary Genomics, DOE Joint Genome Institute and Lawrence Berkeley National Laboratory, and University of California, Berkeley, California 94720, USA

³SymBio Corporation, 1455 Adams Drive, Menlo Park, CA 94025, and University of California, Berkeley, California 94720, USA

author email corresponding author email

BMC Genomics 2007, 8:317doi:10.1186/1471-2164-8-317


Published:	10 September 2007

Additional files

Additional file 1:

Vista plot of HoxAa cluster based on LAGAN alignment with reference sequence Astatotilapia burtoni.

Format: JPEG Size: 1.2MB Download file

Additional file 2:

Vista plot of HoxAb cluster based on LAGAN alignment with reference sequence Astatotilapia burtoni.

Format: JPEG Size: 719KB Download file

Additional file 3:

Vista plot of HoxBa cluster based on LAGAN alignment with reference sequence Gasterosteus aculeatus.

Format: JPEG Size: 836KB Download file

Additional file 4:

Vista plot of HoxBb cluster based on LAGAN alignment with reference sequence Astatotilapia burtoni.

Format: JPEG Size: 683KB Download file

Additional file 5:

Vista plot of HoxCa cluster based on LAGAN alignment with reference sequence Astatotilapia burtoni.

Format: JPEG Size: 1MB Download file

Additional file 6:

Vista plot of HoxDa cluster based on LAGAN alignment with reference sequence Astatotilapia burtoni.

Format: JPEG Size: 901KB Download file

Additional file 7:

Vista plot of HoxDb cluster based on LAGAN alignment with reference sequence Tetraodon nigroviridis.

Format: JPEG Size: 550KB Download file

Additional file 8:

Primers used in this study

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Additional file 9:

Accession numbers of sequences used in this study

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Additional file 10:

Phylogenetic alignment used in this study

Format: TXT Size: 178KB Download file