Table 7 |
||||||
|
DNA databases |
||||||
|
Species |
Sequence type |
Abbreviation |
No. sequences |
Total base pairs |
Average sequence length |
Source |
|
|
||||||
|
Oryza sativa |
CDS |
Os_CD |
62827 |
85784595 |
1365 |
TIGR |
|
Lolium perenne |
MF |
Lp_MF |
471749 |
236911323 |
502 |
ViaLactia |
|
Zea mays |
MF |
Zm_MF |
450197 |
338653263 |
752 |
NCBI |
|
Zea mays |
TA |
Zm_TA |
169087 |
112449533 |
665 |
TIGR |
|
Hordeum_vulgare |
TA |
Hv_TA |
123351 |
83655311 |
678 |
TIGR |
|
Glycine max |
TA |
Gm_TA |
114693 |
65479263 |
571 |
TIGR |
|
Arabidopsis_thaliana |
TA |
At_TA |
148368 |
92081906 |
621 |
TIGR |
|
Arabidopsis_thaliana |
CDS |
At_CD |
30690 |
38043579 |
1240 |
TAIR |
|
|
||||||
|
MF = methylation filtered CDS = predicted complete coding sequences TA = transcript assemblies ViaLactia = ViaLactia Biosciences [60]. NCBI = National Center for Biotechnology Information [61]. Download command line = '(txid4577 [ORGN] AND Quackenbush [AUTH] AND "methylation" [ALL])' obtained from Gramene [9]. TIGR = The Institute for Genome Research [52, 62]. TAIR = The Arabidopsis Information Resource [11]. |
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|
Armstead et al. BMC Genomics 2007 8:283 doi:10.1186/1471-2164-8-283 |
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