Additional file 2.

Conservation scores, peak definitions, putative transcription start site locations, and motif occurrences for the complete set of V1R gene blocks. Gene block conservation scores and sequence walks for 124 intact V1R genes are found at http://igs.wesleyan.edu/stewart_etal2006/SupplementaryA-SequenceWalks/ webcite. To view a gene block, first select a motif directory, then click on a V1R gene name (e.g., "V1ra1"). Coding regions (red), conservation peaks (green), and other regions of the block (blue) are shaded. Gray stripes denote RepeatMasked portions of the gene block. Empirical TSS's determined by 5' RACE are shaded light blue; homology to transcription start sites determined for another subfamily member are highlighted pink. Each horizontal tick mark represents 500 bp. Sequence walker motif occurrences are indicated by vertical lines with the height of the lines indicating individual information of each motif occurrence.

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Stewart and Lane BMC Genomics 2007 8:253   doi:10.1186/1471-2164-8-253