Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes

doi:10.1186/1471-2164-8-244

BMC Genomics

Volume 8

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Research article

Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes

Christian Weile , Paul P Gardner , Mads M Hedegaard and Jeppe Vinther

Molecular Evolution Group, Department of Molecular Biology, University of Copenhagen, Ole Maaløes Vej 5, Building 4.1.27, DK-2200 Copenhagen N, Denmark

author email corresponding author email

BMC Genomics 2007, 8:244doi:10.1186/1471-2164-8-244


Published:	23 July 2007

Additional files

Additional file 1:

alignments and structures of the experimentally investigated CRUFTS and the sequence of the probes used for northern blotting.

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Additional file 2:

UCSC screenshots of the genomic neighborhoods of the verified covariance CRUFTS.

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Additional file 3:

UCSC screenshots of the genomic neighborhoods of the verified hairpin CRUFTS.

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Additional file 4:

Northern blots for the C2780 and C4801 CRUFTS on RNA isolated from the SK-N-AS, U87, U373, HeLa, C2C12, HUH-7 and MCF-7 cell lines.

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