Table 3

Synonymous (Ks) and Nonsynonymous (Ka) substitution rates of M. truncatula and L. japonicus.

Arabidopsis as a refernce

Glycine as a reference

Phaseolus as a reference


Ka

Ks

Ka

Ks

Ka

Ks

Med.#/Lot.

Med./Lot.

Med./Lot.

Med./Lot.

Med./Lot.

Med./Lot.


accD

0.2822/0.1869

0.2074/0.1222

0.2096/0.1234

0.1512/0.0572

0.2587/0.1769

0.2354/0.1265

atpA

---

---

0.0184/0.0092

0.2455/0.3494*

0.0226/0.0134

---

atpB

---

---

0.0232/0.0128

---

---

---

atpH

---

---

---

---

0.0218/0

---

clpP

0.1803/0.0668

---

0.1503/0.0284

---

0.1734/0.0603

---

ndhB

---

0.1297/0.0754

---

0.1189/0.0633

---

0.1126/0.0652

ndhE

---

---

---

0.186/0.4588*

---

---

ndhF

---

---

---

0.4389/0.5855*

---

0.4925/0.6659*

petB

---

---

---

0.2429/0.3904*

---

---

psaB

---

0.3872/0.4844*

---

---

---

---

rbcL

---

---

---

---

---

0.5606/0.3989

rpoC2

---

0.3959/0.4735*

---

---

---

---

rps11

---

---

0.0596/0.0274

---

---

---

rps14

---

---

0.0706/0.0219

---

0.0704/0.0308

---

rps18

0.1263/0.0718

---

0.1107/0.0397

---

0.1152/0.0648

---

rps3

0.1048/0.069

---

0.0862/0.0442

---

0.1013/0.0602

---

rps7

0.0392/0.0055

---

0.0332/0.0055

---

0.0417/0.0137

---

ycf1

---

---

0.178/0.0946

0.2648/0.0946

0.2192/0.1205

0.3529/0.1409

ycf2

0.161/0.0674

0.1576/0.0681

0.1487/0.054

0.1481/0.0535

0.1556/0.0588

0.1511/0.058


* The star signal represents Lotus genes with higher substitution rates than Medicago genes.

#Med. and Lot. indicate respectively Medicago and Lotus.

Guo et al. BMC Genomics 2007 8:228   doi:10.1186/1471-2164-8-228

Open Data