Table 4

Transcription inference of Msn2 and Msn4 based on ChIP-chip binding data from different conditions. Positive and negative effect is shown in normal and italic font, respectively. The "num" column indicates the number of target genes of a transcription factor under a specific condition at the 0.01 significance level according to the ChIP-chip data.

Transcription Factor

Condition

Num

sch9Δ/wt

ras2Δ/wt

tor1Δ/wt


MSN2

YPD

43

0.33

0.04

0.43

Acid

145

9.1E-04

1.2E-05

6.8E-07

RAPA

101

0.14

0.033

0.24

H2O2Hi

114

0.014

0.0031

0.016

H2O2Lo

140

0.18

0.004

0.019

HEAT

24

0.01

0.14

0.37

MSN4

YPD

145

8.5E-04

0.21

7.9E-06

Acid

37

0.13

0.018

0.067

RAPA

131

0.19

0.14

0.31

H2O2Hi

169

0.084

6.7E-04

0.033

H2O2Lo

67

0.19

0.0036

0.048


Cheng et al. BMC Genomics 2007 8:219   doi:10.1186/1471-2164-8-219

Open Data