Table 3 |
||||||||||||||
|
Number of copies classified by truncation level (after filter) |
||||||||||||||
|
Family name |
Genomic copies |
Genomic copies with insertion date |
||||||||||||
|
2 LTRs |
LTR-IR |
IR |
LTR |
Total Frag. |
Total |
LTR/Frag. |
2 LTRs/Total |
2 LTRs |
LTR-IR |
IR |
LTR |
Total Frag. |
Total |
|
|
|
||||||||||||||
|
Osr12 |
5 |
1 |
0 |
0 |
1 |
6 |
0% |
83% |
5 |
1 |
0 |
0 |
1 |
6 |
|
Osr2 |
3 |
2 |
0 |
0 |
2 |
5 |
0% |
60% |
1 |
0 |
0 |
0 |
0 |
1 |
|
Houba/Tos5/Osr13 |
206 |
105 |
14 |
113 |
232 |
438 |
49% |
47% |
199 |
20 |
0 |
15 |
35 |
234 |
|
Osr17 |
50 |
37 |
20 |
5 |
62 |
112 |
8% |
45% |
49 |
5 |
1 |
2 |
8 |
57 |
|
Hopi/Osr27 |
357 |
215 |
177 |
143 |
535 |
892 |
27% |
40% |
338 |
45 |
49 |
39 |
133 |
471 |
|
Osr15 |
28 |
40 |
4 |
0 |
44 |
72 |
0% |
39% |
27 |
6 |
0 |
0 |
6 |
33 |
|
Osr7 |
9 |
10 |
2 |
8 |
20 |
29 |
40% |
31% |
9 |
2 |
0 |
0 |
2 |
11 |
|
Osr36 |
4 |
1 |
8 |
0 |
9 |
13 |
0% |
31% |
4 |
1 |
0 |
0 |
1 |
5 |
|
Osr29 |
85 |
143 |
49 |
82 |
274 |
359 |
30% |
24% |
79 |
9 |
6 |
15 |
30 |
109 |
|
Osr6 |
4 |
3 |
12 |
2 |
17 |
21 |
12% |
19% |
3 |
0 |
0 |
0 |
0 |
3 |
|
Osr8 |
122 |
179 |
41 |
310 |
530 |
652 |
58% |
19% |
104 |
2 |
0 |
8 |
10 |
114 |
|
Osr35 |
1 |
2 |
3 |
0 |
5 |
6 |
0% |
17% |
1 |
0 |
0 |
0 |
0 |
1 |
|
Dagul |
91 |
141 |
52 |
333 |
526 |
617 |
63% |
15% |
87 |
7 |
0 |
25 |
32 |
119 |
|
Osr30 |
143 |
261 |
93 |
497 |
851 |
994 |
58% |
14% |
127 |
11 |
5 |
32 |
48 |
175 |
|
Osr42 |
1 |
1 |
5 |
0 |
6 |
7 |
0% |
14% |
1 |
0 |
0 |
0 |
0 |
1 |
|
Osr3 |
5 |
15 |
16 |
0 |
31 |
36 |
0% |
14% |
5 |
1 |
0 |
0 |
1 |
6 |
|
Osr28 |
4 |
3 |
3 |
23 |
29 |
33 |
79% |
12% |
3 |
1 |
0 |
0 |
1 |
4 |
|
Osr38 |
0 |
2 |
4 |
0 |
6 |
6 |
0% |
0% |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
||||||||||||||
|
Frag.: fragment; LTR: Long Terminal Repeat; IR: Internal Region. |
||||||||||||||
|
Vitte et al. BMC Genomics 2007 8:218 doi:10.1186/1471-2164-8-218 |
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