LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

doi:10.1186/1471-2164-8-218

BMC Genomics

Volume 8

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Research article

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

Clémentine Vitte¹^,2^,4 , Olivier Panaud³ and Hadi Quesneville²

¹Laboratoire Ecologie, Systématique et Evolution, Université Paris Sud, Orsay, France

²Laboratoire Bioinformatique et Génomique, Institut Jacques Monod, Paris, France

³Laboratoire Génétique et Développement des Plantes, Université de Perpignan, Perpignan, France

⁴Bennetzen laboratory, University of Georgia, Athens, GA, USA

author email corresponding author email

BMC Genomics 2007, 8:218doi:10.1186/1471-2164-8-218


Published:	6 July 2007

Additional files

Additional file 1:

Sequences of the 41 LTR retrotransposon reference copies. Sequences can be uploaded in fasta format from the "Vitte_et_al_reference_copies.txt" text file. Note that reference copies are derived from genomic copies. Their LTR sequences have been homogenized by replacing the two LTR sequences by the sequence of the 5' LTR, to avoid detection problems, except for Osr9, Osr10, Osr11, Osr16, Osr18, Osr23, and Osr31 for which the position of the LTR was ambiguous (see text and Table 1 for details).

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