Table 7

Number and maximum length of SSRs present in twenty-six land plant chloroplast genomes.

8,8,9 SSRs (number)

10, 10,12 SSRs (number)


Taxon

Accession Number

Genome size

mono

di

tri

total

mono

di

tri

total

max mono (units)

max di (units)

max tri (units)


Huperzia lucidula

NC_006861

154,373

147

34

80

261

25

10

7

42

15

9

10

Psilotum nudum

NC_003386

138,829

111

35

58

204

28

12

3

43

17

6

5

Adiantum capillus-veneris

NC_004766

150,568

146

32

39

217

94

4

2

100

19

6

4

Pinus thunbergii

NC_001631

119,707

74

36

42

152

20

5

0

25

17

7

3

Pinus koraiensis

NC_004677

116,866

77

38

39

154

36

6

0

42

23

9

3

Oryza nivara

NC_005973

134,494

91

20

42

153

10

4

3

17

13

5

4

Oryza sativa indica 93-11

NC_008155

134,496

94

20

42

156

9

4

3

16

16

5

4

O. sativa japonica Nipponbare

AY522330

134,551

94

20

42

156

11

4

3

18

17

5

4

O. sativa japonica PA64S

AY522331

134,551

94

20

42

156

11

4

3

18

17

5

4

Saccharum officinarum

NC_006084

141,182

128

26

47

201

32

5

1

38

15

5

4

Zea mays

NC_001666

140,384

121

29

52

202

34

6

2

42

18

6

5

Triticum aestivum

NC_002762

134,545

116

33

43

192

24

8

3

35

15

6

5

Nuphar advena

NC_008788

160,866

71

65

84

220

19

23

10

52

16

11

5

Nymphaea alba

NC_006050

159,939

63

60

73

196

15

4

4

23

16

5

4

Amborella trichopoda

NC_005086

162,686

101

47

57

205

35

8

6

49

15

9

4

Calycanthus fertilis

NC_004993

153,337

105

35

93

233

14

8

4

26

13

8

4

Ranunculus macranthus

NC_008796

155,158

146

60

55

261

28

9

3

40

16

8

5

Arabidopsis thaliana

NC_000932

154,478

234

83

61

378

69

18

6

93

17

8

5

Oenothera elata

NC_002693

163,935

155

48

68

271

56

6

8

70

24

6

4

Panax ginseng

NC_006290

156,318

92

39

60

191

18

5

3

26

13

7

4

Nicotiana tabacum

NC_001879

155,939

116

41

73

230

38

7

5

50

17

5

4

Atropa belladonna

NC_004561

156,687

116

46

74

236

39

10

2

51

17

6

4

Spinacia oleracea

NC_002202

150,725

146

55

64

265

40

9

4

53

12

7

4

Epifagus virginiana

NC_001568

70,028

106

36

50

192

25

16

4

45

15

10

5

Lotus japonicus

NC_002694

150,519

236

80

77

393

76

27

6

109

16

11

5

Medicago truncatula

NC_003119

124,033

190

63

93

346

76

28

9

113

18

7

6


Raubeson et al. BMC Genomics 2007 8:174   doi:10.1186/1471-2164-8-174

Open Data