Table 2

Correlation of expression patterns in human normal tissues between intronic miRNAs and their host genes.

miRNA

Host Gene

p value*

Gene Description


miR-106b

MCM7

0.047**

MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)

miR-107

PANK1

0.022

pantothenate kinase 1

miR-126

EGFL7

0.027

EGF-like-domain, multiple 7

miR-128a

R3HDM1

0.002

R3H domain (binds single-stranded nucleic acids) containing 1

miR-128b

ARPP-21

0.001

cyclic AMP-regulated phosphoprotein, 21 kD

miR-139

PDE2A

0.007

phosphodiesterase 2A, cGMP-stimulated

miR-140

AIP2

0.249

WW domain containing E3 ubiquitin protein ligase 2

miR-148b

COPZ1

0.472

coatomer protein complex, subunit zeta 1

miR-149

GPC1

0.053

glypican 1

miR-151

PTK2

0.031

protein tyrosine kinase 2; focal adhesion kinase 1

miR-15b

SMC4L1

0.003

SMC4 structural maintenance of chromosomes 4-like 1 (yeast)

miR-186

ZNF265

0.335

zinc finger protein 265

miR-188

CLCN5

0.07

chloride channel 5 (nephrolithiasis 2, X-linked, Dent disease)

miR-190

TLN2

0.001

talin 2

miR-196b

HOXA9

0.005

homeo box A9

miR-204

TRPM3

0.009

transient receptor potential cation channel, subfamily M, member 3

miR-208

MYH6

6 × 10-30

myosin, heavy polypeptide 6, cardiac muscle, alpha

miR-211

TRPM1

0.004

transient receptor potential cation channel, subfamily M, member 1

miR-224

GABRE

0.006

gamma-aminobutyric acid (GABA) A receptor, epsilon

miR-25

MCM7

0.022

MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)

miR-28

LPP

0.023

LIM domain containing preferred translocation partner in lipoma

miR-30e

NFYC

0.618

nuclear transcription factor Y, gamma

miR-326

ARRB1

0.013

arrestin, beta 1

miR-33

SREBF2

0.287

sterol regulatory element binding transcription factor 2

miR-335

MEST

0.006

mesoderm specific transcript homolog (mouse)

miR-338

AATK

0.0003

apoptosis-associated tyrosine kinase

miR-340

RNF130

0.346

ring finger protein 130

miR-342

EVL

0.017

Enah/Vasp-like

miR-346

GRID1

0.895

glutamate receptor, ionotropic, delta 1

miR-452

GABRE

0.0001

gamma-aminobutyric acid (GABA) A receptor, epsilon

miR-93

MCM7

0.022

MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)


*When multiple clones are available in the database, the clone with the best p value was chosen. **Pearson correlation; bold-type numbers indicate those with p values > 0.07

Liang et al. BMC Genomics 2007 8:166   doi:10.1186/1471-2164-8-166

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