BMC Genomics

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Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates

Fang Liu, Tor-Kristian Jenssen, Jeff Trimarchi, Claudio Punzo, Connie L Cepko, Lucila Ohno-Machado, Eivind Hovig and Winston Patrick Kuo*

BMC Genomics 2007, 8:153 doi:10.1186/1471-2164-8-153

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Research article   Open Access Highly Accessed

Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis

Franc Llorens, Manuela Hummel, Xavier Pastor, Anna Ferrer, Raquel Pluvinet, Ana Vivancos, Ester Castillo, Susana Iraola, Ana M Mosquera, Eva González, Juanjo Lozano, Matthew Ingham, Juliane C Dohm, Marc Noguera, Robert Kofler, Jose del Río, Mònica Bayés, Heinz Himmelbauer, Lauro Sumoy BMC Genomics 2011, 12:326 (23 June 2011)

Research article   Open Access Highly Accessed

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

Ashish Agarwal, David Koppstein, Joel Rozowsky, Andrea Sboner, Lukas Habegger, LaDeana W Hillier, Rajkumar Sasidharan, Valerie Reinke, Robert H Waterston, Mark Gerstein BMC Genomics 2010, 11:383 (17 June 2010)

Research   Open Access

In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure

Hangxing Yang Biology Direct 2009, 4:45 (21 November 2009)

Research article   Open Access

Platform dependence of inference on gene-wise and gene-set involvement in human lung development

Rose Du, Kelan Tantisira, Vincent Carey, Soumyaroop Bhattacharya, Stephanie Metje, Alvin T Kho, Barbara J Klanderman, Roger Gaedigk, Ross Lazarus, Thomas J Mariani, J Steven Leeder, Scott T Weiss BMC Bioinformatics 2009, 10:189 (19 June 2009)

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Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies

Henrik Hornshøj, Emøke Bendixen, Lene N Conley, Pernille K Andersen, Jakob Hedegaard, Frank Panitz, Christian Bendixen BMC Genomics 2009, 10:30 (19 January 2009)

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Detailed transcriptome atlas of the pancreatic beta cell

Burak Kutlu, David Burdick, David Baxter, Joanne Rasschaert, Daisy Flamez, Decio L Eizirik, Nils Welsh, Nathan Goodman, Leroy Hood BMC Medical Genomics 2009, 2:3 (15 January 2009)

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Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data

Chang-Kyu Lee, Susan M Sunkin, Chihchau Kuan, Carol L Thompson, Sayan Pathak, Lydia Ng, Chris Lau, Shanna Fischer, Marty Mortrud, Cliff Slaughterbeck, Allan Jones, Ed Lein, Michael Hawrylycz Genome Biology 2008, 9:R23 (30 January 2008)

This study introduces a novel method for standardized relative quantification of colorimetric in situ hybridization signal that enables a large-scale cross-platform expression level comparison of in situ hybridization with two publicly available microarray brain data sources.

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A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis

Junfeng Chen, Vikas Agrawal, Magnus Rattray, Marilyn AL West, Dina A St Clair, Richard W Michelmore, Sean J Coughlan, Blake C Meyers BMC Genomics 2007, 8:414 (12 November 2007)