Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola

doi:10.1186/1471-2164-8-143

BMC Genomics

Volume 8

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Viñuelas J
Calevro F
Remond D
Bernillon J
Rahbé Y
Febvay G
Fayard JM
Charles H

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Viñuelas J
Calevro F
Remond D
Bernillon J
Rahbé Y
Febvay G
Fayard JM
Charles H
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Research article

Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola

José Viñuelas¹ , Federica Calevro¹ , Didier Remond² , Jacques Bernillon³ , Yvan Rahbé¹ , Gérard Febvay¹ , Jean-Michel Fayard¹ and Hubert Charles¹

¹UMR 203 Biologie Fonctionnelle Insectes et Interactions, IFR41, INRA, INSA-Lyon, F-69621 Villeurbanne, France

²Laboratoire de Dynamique des Machines et des Structures, INSA-Lyon, F-69621 Villeurbanne, France

³DTAMB, Université Claude Bernard Lyon-1, F-69622 Villeurbanne, France

author email corresponding author email

BMC Genomics 2007, 8:143doi:10.1186/1471-2164-8-143


Published:	4 June 2007

Additional files

Additional file 1:

Analysis of genomic DNA signals hybridized on the Buchnera oligo-array. This figure shows the genomic DNA hybridization signals on the Buchnera oligo-array.

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Additional file 2:

Distribution of log₂mRNA abundances (A) before and (B) after gDNA normalization. This figure compares the distributions of Buchnera gene transcription levels before and after genomic DNA normalization.

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Additional file 3:

Organization of genes in the chromosome of Buchnera aphidicola. This figure gives information about gene organization in the Buchnera aphidicola genome.

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Additional file 4:

Periodograms of Buchnera log₂normalized mRNA abundances. This figure illustrates periodograms of Buchnera normalized mRNA abundances for the original location of genes on the chromosome and according to different simulated permutations of gene positions.

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