A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution

doi:10.1186/1471-2164-8-109

BMC Genomics

Volume 8

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Research article

A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution

Patrick D Danley¹ , Sean P Mullen¹ , Fenglong Liu² , Vishvanath Nene³ , John Quackenbush²^,4^,5 and Kerry L Shaw¹

¹Department of Biology, University of Maryland, College Park, MD 20742, USA

²Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA

³The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA

⁴Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA

⁵Department of Biostatistics, Harvard School of Public Health, Boston, MA 02115, USA

author email corresponding author email

BMC Genomics 2007, 8:109doi:10.1186/1471-2164-8-109


Published:	25 April 2007

Additional files

Additional file 1:

BLAT best hits results. This is a text file that lists the top BLAT matches for each of the 5,225 unique sequences with significant sequence similarity to known proteins.

Format: XLS Size: 616KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

Characters used in the gene alignments for comparative analysis. This file identifies the characters used in the comparative analysis of the 10 unigenes presented in Table 5.

Format: DOC Size: 29KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional file 3:

NEXUS file of Actin alignment. This file presents the alignment of the six actin sequences used for comparative analysis.

Format: NEX Size: 26KB Download file

Additional file 4:

NEXUS file of alpha-tubulin alignment. This file presents the alignment of the six alpha-tubulin sequences used for comparative analysis.

Format: NEX Size: 22KB Download file

Additional file 5:

NEXUS file of alpha-tubulin alignment. This file presents the alignment of the six alpha-tubulin sequences used for comparative analysis.

Format: NEX Size: 24KB Download file

Additional file 6:

NEXUS file of dynein (light chain) alignment. This file presents the alignment of the six dynein (light chain) sequences used for comparative analysis.

Format: ADDI Size: 40KB Download file

Additional file 7:

NEXUS file of histone 2a alignment. This file presents the alignment of the six histone 2a sequences used for comparative analysis.

Format: NEX Size: 11KB Download file

Additional file 8:

NEXUS file of HSP40 alignment. This file presents the alignment of the six HSP40 sequences used for comparative analysis.

Format: NEX Size: 21KB Download file

Additional file 9:

NEXUS file of malate esterase alignment. This file presents the alignment of the six malate esterase sequences used for comparative analysis.

Format: NEX Size: 16KB Download file

Additional file 10:

NEXUS file of myosin 2 (light chain) alignment. This file presents the alignment of the six myosin 2 (light chain) sequences used for comparative analysis.

Format: NEX Size: 21KB Download file

Additional file 11:

NEXUS file of opsin alignment. This file presents the alignment of the six opsin sequences used for comparative analysis.

Format: NEX Size: 19KB Download file

Additional file 12:

NEXUS file of polyubiquitin alignment. This file presents the alignment of the six polyubiquitin sequences used for comparative analysis.

Format: NEX Size: 37KB Download file