Additional file 1.

Alignment of DNA sequences from all copies of ISPsy8 in Pseudomonas syringae DC3000 and their flanking regions. In the case named IS8-5 the broken REP element is in the plus strand and 32 bases of the REP element are upstream of the IS element while the remaining 20 bases are downstream. Symmetrically, in the four cases (IS8-1, IS8-2, IS8-3 and IS8-4) in which the REP element is placed in the minus strand, the 20 last bases of the REP sequence are in the minus strand upstream ISPsy8 and the first 31 bases of REP sequence are downstream.

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Tobes and Pareja BMC Genomics 2006 7:62   doi:10.1186/1471-2164-7-62