NovelFam3000 – Uncharacterized human protein domains conserved across model organisms

doi:10.1186/1471-2164-7-48

BMC Genomics

Volume 7

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Kemmer D
Podowski RM
Arenillas D
Lim J
Hodges E
Roth P
Sonnhammer EL
Höög C
Wasserman WW

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Podowski RM
Arenillas D
Lim J
Hodges E
Roth P
Sonnhammer EL
Höög C
Wasserman WW
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Database

NovelFam3000 – Uncharacterized human protein domains conserved across model organisms

Danielle Kemmer¹ , Raf M Podowski¹ , David Arenillas² , Jonathan Lim² , Emily Hodges¹ , Peggy Roth³ , Erik LL Sonnhammer¹ , Christer Höög¹ and Wyeth W Wasserman²^,4

¹Center for Genomics and Bioinformatics, Karolinska Institutet, Stockholm, Sweden

²Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver, Canada

³Department of Developmental Biology, Stockholm University, Stockholm, Sweden

⁴Department of Medical Genetics, University of British Columbia, Vancouver, Canada

author email corresponding author email

BMC Genomics 2006, 7:48doi:10.1186/1471-2164-7-48


Published:	13 March 2006

Additional files

Additional File 1:

Supplementary Figure. This drawing represents the NovelFam3000 database schema. Each rectangle, labeled with the table name at the top, represents a table in the database. The field names for each table are listed with symbols to the left. Primary Keys are denoted by a yellow key. Foreign Keys are denoted by a red diamond and "(FK)" after the field name. Regular Fields are denoted by a blue diamond. Relations between the tables are indicated by blue lines, with the diamond-end of the line at the referenced table and the other end at the referencing table. The relations are as follows: Rel_01: Comments can be made about a gene; Rel_02: News items can be associated with a gene; Rel_03: Resources can be associated with a gene; Rel_04: Experiments can be associated with a gene; Rel_05: Pfam sequences can be associated with a gene; Rel_06: Pfam sequences can be associated with a Pfam family; Rel_07: An experiment can be associated with multiple instances of experimental data.

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Additional File 2:

Materials and methods. This file contains detailed materials and methods for both the database implementation and the experimental data

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Additional File 3:

Primer sequences. This file contains nucleotide sequences for the gene-specific primers used for RT-PCR amplification of predicted human genes

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