BMC Genomics

official impact factor 4.21

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Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks

Marc RJ Carlson, Bin Zhang, Zixing Fang, Paul S Mischel, Steve Horvath and Stanley F Nelson*

BMC Genomics 2006, 7:40 doi:10.1186/1471-2164-7-40

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Proceedings   Open Access

Prioritizing disease candidate genes by a gene interconnectedness-based approach

Chia-Lang Hsu, Yen-Hua Huang, Chien-Ting Hsu, Ueng-Cheng Yang BMC Genomics 2011, 12(Suppl 3):S25 (30 November 2011)

Research article   Open Access

Genes related to the very early stage of ConA-induced fulminant hepatitis: a gene-chip-based study in a mouse model

Feng Chen, Hai-Hong Zhu, Lin-Fu Zhou, Jie Li, Li-Ying Zhao, Shan-Shan Wu, Jing Wang, Wei Liu, Zhi Chen BMC Genomics 2010, 11:240 (15 April 2010)

Methodology article   Open Access Highly Accessed

A general co-expression network-based approach to gene expression analysis: comparison and applications

Jianhua Ruan, Angela K Dean, Weixiong Zhang BMC Systems Biology 2010, 4:8 (2 February 2010)

Proceedings   Open Access

MINER: exploratory analysis of gene interaction networks by machine learning from expression data

Sidath Kadupitige, Kin Leung, Julia Sellmeier, Jane Sivieng, Daniel R Catchpoole, Michael E Bain, Bruno A Gaƫta BMC Genomics 2009, 10(Suppl 3):S17 (3 December 2009)

Research article   Open Access Highly Accessed

Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients

Christiaan GJ Saris, Steve Horvath, Paul WJ van Vught, Michael A van Es, Hylke M Blauw, Tova F Fuller, Peter Langfelder, Joseph DeYoung, John HJ Wokke, Jan H Veldink, Leonard H van den Berg, Roel A Ophoff BMC Genomics 2009, 10:405 (27 August 2009)

Short Report   Open Access

Network module detection: Affinity search technique with the multi-node topological overlap measure

Ai Li, Steve Horvath BMC Research Notes 2009, 2:142 (20 July 2009)

Research article   Open Access Highly Accessed

Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells

Mike J Mason, Guoping Fan, Kathrin Plath, Qing Zhou, Steve Horvath BMC Genomics 2009, 10:327 (20 July 2009)

Software   Open Access Highly Accessed

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder, Steve Horvath BMC Bioinformatics 2008, 9:559 (29 December 2008)

Research article   Open Access Highly Accessed

An in silico method for detecting overlapping functional modules from composite biological networks

Ioannis A Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos BMC Systems Biology 2008, 2:93 (1 November 2008)

Research article   Open Access Highly Accessed

Regulon organization of Arabidopsis

Wieslawa I Mentzen, Eve Wurtele BMC Plant Biology 2008, 8:99 (30 September 2008)

In response to environmental and other experimental perturbations, the Arabidopsis transcriptome shows 998 regulons of co-expressed genes, corresponding to many known biological processes but also including many unannotated genes.

Methodology article   Open Access Highly Accessed

Using genetic markers to orient the edges in quantitative trait networks: The NEO software

Jason E Aten, Tova F Fuller, Aldons J Lusis, Steve Horvath BMC Systems Biology 2008, 2:34 (15 April 2008)

Methodology article   Open Access Highly Accessed

Eigengene networks for studying the relationships between co-expression modules

Peter Langfelder, Steve Horvath BMC Systems Biology 2007, 1:54 (21 November 2007)

Research article   Open Access

Growing functional modules from a seed protein via integration of protein interaction and gene expression data

Ioannis A Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos BMC Bioinformatics 2007, 8:408 (23 October 2007)

Method   Open Access Highly Accessed

Celsius: a community resource for Affymetrix microarray data

Allen Day, Marc RJ Carlson, Jun Dong, Brian D O'Connor, Stanley F Nelson Genome Biology 2007, 8:R112 (14 June 2007)

Celsius is a new system that serves as a warehouse by aggregating Affymetrix files and associated metadata, and containing the largest publicly available source of Affymetrix microarray data.

Research article   Open Access Highly Accessed

Understanding network concepts in modules

Jun Dong, Steve Horvath BMC Systems Biology 2007, 1:24 (4 June 2007)

Research article   Open Access Highly Accessed

Gene network interconnectedness and the generalized topological overlap measure

Andy M Yip, Steve Horvath BMC Bioinformatics 2007, 8:22 (24 January 2007)