|
Estimation of the effective SNP size |
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| Total # of test SNPs |
Effective SNP size (Ne) |
95% C.I. |
|
|
|
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| Human |
5,200,425 |
38,200 |
35,700 – 40,700 |
| Chimpanzee |
1,470,501 |
39,300 |
37,200 – 41,400 |
| Dog |
2,690,084 |
38,000 |
35,700 – 40,300 |
| Mouse (Build 126) |
7,832,159 |
38,700 |
36,400 – 41,000 |
| Mouse (Build 123) |
376,146 |
39,100 |
36,800 – 41,400 |
| Human HapMap phase I |
861,498 |
38,400 |
35,800 – 41,000 |
| Human HapMap phase II |
2,435,362 |
39,100 |
36,900 – 41,300 |
| Human intergenic regiona |
2,422,730 |
39,100 |
36,800 – 41,400 |
| Human genea |
744,987 |
39,600 |
37,400 – 41,800 |
| Human introna |
889,956 |
39,200 |
37,000 – 41,400 |
| Human CpG islanda |
95,561 |
42,200 |
39,500 – 44,900 |
|
aThe average nucleotide frequencies in the genomic regions were used. | |||
Seo et al. BMC Genomics 2006 7:329 doi:10.1186/1471-2164-7-329 |
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