Table 5

Frame change and protein truncation statistics by class for FL-cDNAs supported assemblies within the same cluster.

Rice


Isoform

Total

No. with Frame Changes

Average % of protein length


AA

61

44 (72.1%)

74.7

AD

36

22 (61.1%)

76.6

ATE

28

0 (0%)

83.9

SE

9

9 (100%)

56.4

RE

11

5 (45.5%)

79.2

IWI

33

0 (0.0%)

77.2

TWI

127

0 (0.0%)

69.1

SI

14

14 (100%)

77.6

RI

165

10 (6.1%)

73.1


Arabidopsis


Isoform

Total

No. with Frame Changes

Average % of protein length


AA

120

94 (78.3%)

73.6

AD

62

45 (72.6%)

73.4

ATE

7

0 (0%)

70.1

SE

5

5 (100%)

75.1

RE

5

0 (0%)

80.0

IWI

20

0 (0%)

76.8

TWI

66

0 (0%)

72.0

SI

23

23 (100%)

74.0

RI

302

20 (6.6%)

77.2


This analysis is restricted to those isoforms displaying only a single class of alternative splicing when compared to the gene structure.

Campbell et al. BMC Genomics 2006 7:327   doi:10.1186/1471-2164-7-327

Open Data