Table 5 |
|||
|
Frame change and protein truncation statistics by class for FL-cDNAs supported assemblies within the same cluster. |
|||
|
Rice |
|||
|
|
|||
|
Isoform |
Total |
No. with Frame Changes |
Average % of protein length |
|
|
|||
|
AA |
61 |
44 (72.1%) |
74.7 |
|
AD |
36 |
22 (61.1%) |
76.6 |
|
ATE |
28 |
0 (0%) |
83.9 |
|
SE |
9 |
9 (100%) |
56.4 |
|
RE |
11 |
5 (45.5%) |
79.2 |
|
IWI |
33 |
0 (0.0%) |
77.2 |
|
TWI |
127 |
0 (0.0%) |
69.1 |
|
SI |
14 |
14 (100%) |
77.6 |
|
RI |
165 |
10 (6.1%) |
73.1 |
|
|
|||
|
Arabidopsis |
|||
|
|
|||
|
Isoform |
Total |
No. with Frame Changes |
Average % of protein length |
|
|
|||
|
AA |
120 |
94 (78.3%) |
73.6 |
|
AD |
62 |
45 (72.6%) |
73.4 |
|
ATE |
7 |
0 (0%) |
70.1 |
|
SE |
5 |
5 (100%) |
75.1 |
|
RE |
5 |
0 (0%) |
80.0 |
|
IWI |
20 |
0 (0%) |
76.8 |
|
TWI |
66 |
0 (0%) |
72.0 |
|
SI |
23 |
23 (100%) |
74.0 |
|
RI |
302 |
20 (6.6%) |
77.2 |
|
|
|||
|
This analysis is restricted to those isoforms displaying only a single class of alternative splicing when compared to the gene structure. |
|||
|
Campbell et al. BMC Genomics 2006 7:327 doi:10.1186/1471-2164-7-327 |
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