Table 1

Summary statistics are given for the PASA-generated assemblies in rice and Arabidopsis.

Number

Rice

Arabidopsis


Total ESTs

1,156,705

690,119

Total mRNAs

35,078 (33,799 FL)

66,642 (61,117 FL)

Total Transcripts

1,203,577

690,119

Survive Cleaning

1,190,502 (33,797 FL)

683,137 (61,113 FL)

Map to Genome

1,149,730 (32,349 FL)

671,774 (61,085 FL)

Valid Alignments

1,055,860 (30,099 FL)

603,234 (56,668 FL)

Excluding Single Exon Transcripts

501,379 (30,099 FL)

369,092 (56,668 FL)

PASA alignment assemblies

43,869 (23,308 FL)

29,183 (22,951 FL)

PASA assembly clusters

27,497 (19,888 FL)

21,922 (18,701 FL)


Campbell et al. BMC Genomics 2006 7:327   doi:10.1186/1471-2164-7-327

Open Data