|
Summary statistics are given for the PASA-generated assemblies in rice and Arabidopsis. |
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| Number |
Rice |
Arabidopsis |
|
|
||
| Total ESTs |
1,156,705 |
690,119 |
| Total mRNAs |
35,078 (33,799 FL) |
66,642 (61,117 FL) |
| Total Transcripts |
1,203,577 |
690,119 |
| Survive Cleaning |
1,190,502 (33,797 FL) |
683,137 (61,113 FL) |
| Map to Genome |
1,149,730 (32,349 FL) |
671,774 (61,085 FL) |
| Valid Alignments |
1,055,860 (30,099 FL) |
603,234 (56,668 FL) |
| Excluding Single Exon Transcripts |
501,379 (30,099 FL) |
369,092 (56,668 FL) |
| PASA alignment assemblies |
43,869 (23,308 FL) |
29,183 (22,951 FL) |
| PASA assembly clusters |
27,497 (19,888 FL) |
21,922 (18,701 FL) |
Campbell et al. BMC Genomics 2006 7:327 doi:10.1186/1471-2164-7-327 |
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