Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
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* Corresponding author: C Robin Buell rbuell@tigr.org
- † Equal contributors
BMC Genomics 2006, 7:327 doi:10.1186/1471-2164-7-327
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BioMed Central: 11 citations
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Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types Shaogui Guo, Yi Zheng, Je-Gun Joung, Shiqiang Liu, Zhonghua Zhang, Oswald R Crasta, Bruno W Sobral, Yong Xu, Sanwen Huang, Zhangjun Fei BMC Genomics 2010, 11:384 (17 June 2010) |
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Research article
Prevalence of alternative splicing choices in Arabidopsis thaliana Adam C English, Ketan S Patel, Ann E Loraine BMC Plant Biology 2010, 10:102 (4 June 2010) |
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Research article
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Edouard I Severing, Aalt DJ van Dijk, Willem J Stiekema, Roeland CHJ van Ham BMC Genomics 2009, 10:154 (9 April 2009) |
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Research article
Genomic and expression analysis of glycosyl hydrolase family 35 genes from rice (Oryza sativa L.) Waraporn Tanthanuch, Mallika Chantarangsee, Janjira Maneesan, James Ketudat-Cairns BMC Plant Biology 2008, 8:84 (30 July 2008) |
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Discovery notes
Accumulation of GC donor splice signals in mammals Alexander Churbanov, Stephen Winters-Hilt, Eugene V Koonin, Igor B Rogozin Biology Direct 2008, 3:30 (9 July 2008) Reconstruction of the evolution of donor splice sites in mammals reveals accumulation of minor GC sites that could contribute to the evolution of alternative splicing.
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Research article
Stefanie Schindler, Karol Szafranski, Michael Hiller, Gul Ali, Saiprasad G Palusa, Rolf Backofen, Matthias Platzer, Anireddy SN Reddy BMC Genomics 2008, 9:159 (10 April 2008) |
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Research
Cross-kingdom patterns of alternative splicing and splice recognition Abigail M McGuire, Matthew D Pearson, Daniel E Neafsey, James E Galagan Genome Biology 2008, 9:R50 (5 March 2008) A comprehensive survey of alternate splicing across 42 eukaryotes so as to gain insight into how spliceosomal introns are recognized. |
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Research article
Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes Bing-Bing Wang, Mike O'Toole, Volker Brendel, Nevin D Young BMC Plant Biology 2008, 8:17 (19 February 2008) |
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Method
Brian J Haas, Steven L Salzberg, Wei Zhu, Mihaela Pertea, Jonathan E Allen, Joshua Orvis, Owen White, C Robin Buell, Jennifer R Wortman Genome Biology 2008, 9:R7 (11 January 2008) EVidenceModeler (EVM) is an automated annotation tool that predicts protein-coding regions, alternatively spliced transcripts and untranslated regions of eukaryotic genes. |
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Research article
cDNA sequences reveal considerable gene prediction inaccuracy in the Plasmodium falciparum genome Fangli Lu, Hongying Jiang, Jinhui Ding, Jianbing Mu, Jesus G Valenzuela, José MC Ribeiro, Xin-zhuan Su BMC Genomics 2007, 8:255 (27 July 2007) |